View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_28 (Length: 238)
Name: NF19842_high_28
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_28 |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 8070709 - 8070907
Alignment:
| Q |
17 |
tgtgaaccagaaccatgatgaatcgcagcggcgtaactactatcaccacgcaaacgccactaagaaggatgaggaaaaccatccatccttacaccagata |
116 |
Q |
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| T |
8070709 |
tgtgaaccggaaccatgacgaatcgcagcggcgtaactactaccaccacgcaaacgccactgagaaggatgaggaaaaccatccatctttacaccagatc |
8070808 |
T |
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| Q |
117 |
tgctaccatattcaaaacgccaacgatctcaaaagcaactctaagtacgagaacctctaaacgccaccgtgggtggcagtgacaccaaagaaaccaacc |
215 |
Q |
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| T |
8070809 |
tgctaccatattcaaaacgccaacgatctcaaaagcaactctaagtacgagaacctctaaacgccaccgtgggtggcggtgacaccaaagaaaccaacc |
8070907 |
T |
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Target: scaffold0625 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 435 - 397
Alignment:
| Q |
180 |
ccaccgtgggtggcagtgacaccaaagaaaccaaccctg |
218 |
Q |
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| T |
435 |
ccaccgtgggtgacagtgacaccaaagaaaccgaccctg |
397 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 18978691 - 18978729
Alignment:
| Q |
180 |
ccaccgtgggtggcagtgacaccaaagaaaccaaccctg |
218 |
Q |
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| T |
18978691 |
ccaccgtgggtgacagtgacaccaaagaaaccgaccctg |
18978729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 18996221 - 18996259
Alignment:
| Q |
180 |
ccaccgtgggtggcagtgacaccaaagaaaccaaccctg |
218 |
Q |
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| T |
18996221 |
ccaccgtgggtgacagtgacaccaaagaaaccgaccctg |
18996259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 28088329 - 28088370
Alignment:
| Q |
170 |
cctctaaacgccaccgtgggtggcagtgacaccaaagaaacc |
211 |
Q |
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| T |
28088329 |
cctcgaaacaccaccgtgggtggcagtgacaacaaagaaacc |
28088370 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 13434170 - 13434125
Alignment:
| Q |
166 |
agaacctctaaacgccaccgtgggtggcagtgacaccaaagaaacc |
211 |
Q |
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| T |
13434170 |
agaacctcgaaacaccaccatgggtggcagtgacaacaaagaaacc |
13434125 |
T |
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