View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_high_3 (Length: 753)

Name: NF19842_high_3
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_high_3
NF19842_high_3
[»] chr7 (6 HSPs)
chr7 (121-738)||(353996-354613)
chr7 (428-739)||(10580686-10580991)
chr7 (441-675)||(10575299-10575532)
chr7 (1-56)||(353876-353931)
chr7 (315-365)||(10580612-10580662)
chr7 (600-672)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (441-676)||(21584633-21584867)
chr3 (442-672)||(25084951-25085180)
chr3 (442-672)||(24923500-24923729)
chr3 (442-672)||(24497299-24497528)
chr3 (442-669)||(24919929-24920155)
chr3 (441-672)||(24981958-24982188)
chr3 (502-672)||(31825597-31825766)
[»] chr8 (1 HSPs)
chr8 (441-676)||(14261068-14261302)
[»] chr4 (2 HSPs)
chr4 (442-676)||(22898466-22898699)
chr4 (442-676)||(22950134-22950367)
[»] chr2 (1 HSPs)
chr2 (442-676)||(41027485-41027718)


Alignment Details
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 121 - 738
Target Start/End: Original strand, 353996 - 354613
Alignment:
Q  121 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  353996 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat 354095  T
Q  221 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354096 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 354195  T
Q  321 tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354196 tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 354295  T
Q  421 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354296 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 354395  T
Q  521 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354396 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg 354495  T
Q  621 ttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaag 720  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354496 ttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaag 354595  T
Q  721 atttgttatgttgtttct 738  Q
    ||||||||||||||||||    
T  354596 atttgttatgttgtttct 354613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 428 - 739
Target Start/End: Original strand, 10580686 - 10580991
Alignment:
Q  428 taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 527  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580686 taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 10580785  T
Q  528 aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactta 627  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||    
T  10580786 aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta 10580884  T
Q  628 cactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgtt 727  Q
    ||||||||     | |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  10580885 cactgagc-----atgaggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaagaagatgaagatttgtt 10580979  T
Q  728 atgttgtttctg 739  Q
    | | ||||||||    
T  10580980 aagctgtttctg 10580991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 441 - 675
Target Start/End: Original strand, 10575299 - 10575532
Alignment:
Q  441 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 540  Q
    ||||||||| ||||||||| ||||||||||||||||  | |  ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  10575299 aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg 10575398  T
Q  541 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 640  Q
    || || ||||||||  || ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||||| |||     
T  10575399 aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcg 10575497  T
Q  641 aggaggaagactctgactgctatggatgttgttta 675  Q
    |||||||| ||| ||||||||||||||||||||||    
T  10575498 aggaggaaaactgtgactgctatggatgttgttta 10575532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 353876 - 353931
Alignment:
Q  1 agagagaaagaaacatgtaagaacgaagaaagagtgaatcttttgctatttttatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  353876 agagagaaagaaacatgtaagaacgaagaaagagtgaatcttttgctatttttatt 353931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
Q  315 ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg 365  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10580612 ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg 10580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 672
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  600 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 672  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 441 - 676
Target Start/End: Complemental strand, 21584867 - 21584633
Alignment:
Q  441 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 540  Q
    ||||||||||||||||||| ||||  | || |||||| | | ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||     
T  21584867 aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt 21584768  T
Q  541 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 640  Q
    ||||| ||||||||||| | | |||||||||| |||||||||  | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| ||||    
T  21584767 aagagaatcagtggtttgatt-tatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgca 21584669  T
Q  641 aggaggaagactctgactgctatggatgttgtttat 676  Q
    |||||||||||| |||||||||||||||||||||||    
T  21584668 aggaggaagactgtgactgctatggatgttgtttat 21584633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 442 - 672
Target Start/End: Original strand, 25084951 - 25085180
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||||||||||||||||||||||||||||    
T  25084951 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga 25085050  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    |||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||  ||||    
T  25085051 agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaa 25085149  T
Q  642 ggaggaagactctgactgctatggatgttgt 672  Q
    ||||||||||| |||| || |||||||||||    
T  25085150 ggaggaagactgtgacagccatggatgttgt 25085180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 442 - 672
Target Start/End: Complemental strand, 24923729 - 24923500
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24923729 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24923630  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    |||| |||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||||||  ||||    
T  24923629 agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaa 24923531  T
Q  642 ggaggaagactctgactgctatggatgttgt 672  Q
    ||||||||||  |||| || |||||||||||    
T  24923530 ggaggaagacagtgacagccatggatgttgt 24923500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 442 - 672
Target Start/End: Complemental strand, 24497528 - 24497299
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||||||||||||| | ||| | ||||||||| | |  ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24497528 ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24497429  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    |||| |||||||| || | ||||||| ||||  ||||| || |||||||| |||||| | |||| |||  ||||||| ||||| ||||||||||  ||||    
T  24497428 agagaatcagtggattga-tctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaa 24497330  T
Q  642 ggaggaagactctgactgctatggatgttgt 672  Q
    ||||||||||| |||| || |||||||||||    
T  24497329 ggaggaagactgtgacagccatggatgttgt 24497299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 442 - 669
Target Start/End: Complemental strand, 24920155 - 24919929
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||||    
T  24920155 ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga 24920056  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    |||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||||||  ||| |||||||||| || ||||||||||  || |    
T  24920055 agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgcta 24919957  T
Q  642 ggaggaagactctgactgctatggatgt 669  Q
    ||||||||||  |||| || ||||||||    
T  24919956 ggaggaagacagtgacagccatggatgt 24919929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 672
Target Start/End: Original strand, 24981958 - 24982188
Alignment:
Q  441 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 540  Q
    ||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||     
T  24981958 aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt 24982057  T
Q  541 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 640  Q
    ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| ||||||||||  ||     
T  24982058 aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgct 24982156  T
Q  641 aggaggaagactctgactgctatggatgttgt 672  Q
    |||||||||||| | || || |||||||||||    
T  24982157 aggaggaagactgttaccgccatggatgttgt 24982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 502 - 672
Target Start/End: Complemental strand, 31825766 - 31825597
Alignment:
Q  502 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 601  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  602 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 672  Q
    ||||  ||  ||||||| || || ||||||||||  || |||||||||||  | || || |||||||||||    
T  31825667 aatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 441 - 676
Target Start/End: Complemental strand, 14261302 - 14261068
Alignment:
Q  441 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 540  Q
    ||||||||||||||||||| |||||||||| || ||| | |  ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  14261302 aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg 14261203  T
Q  541 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 640  Q
    ||||| ||||| ||  || || ||||| ||||   | || |||||||||||||||||| |||||| |||  | ||||||||||| || ||||| | |||     
T  14261202 aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcg 14261104  T
Q  641 aggaggaagactctgactgctatggatgttgtttat 676  Q
    |||||||||||  | |||||||||||||||||||||    
T  14261103 aggaggaagacggttactgctatggatgttgtttat 14261068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 442 - 676
Target Start/End: Original strand, 22898466 - 22898699
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22898565  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    || | ||||||||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || |    
T  22898566 agcgtatcagtggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgcta 22898664  T
Q  642 ggaggaagactctgactgctatggatgttgtttat 676  Q
    | ||||||||  | |||||||||||||| ||||||    
T  22898665 gaaggaagacggttactgctatggatgtggtttat 22898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 442 - 676
Target Start/End: Original strand, 22950134 - 22950367
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22950233  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    || | ||||||||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || |    
T  22950234 agcgtatcagtggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgcta 22950332  T
Q  642 ggaggaagactctgactgctatggatgttgtttat 676  Q
    | ||||||||  | |||||||||||||| ||||||    
T  22950333 gaaggaagacggttactgctatggatgtggtttat 22950367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 442 - 676
Target Start/End: Original strand, 41027485 - 41027718
Alignment:
Q  442 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 541  Q
    ||||||||||| |||||  |||| || ||||| ||| | | ||||||||||||||| || ||||| ||||||||| | |||||  | ||||| || ||||    
T  41027485 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtga 41027584  T
Q  542 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 641  Q
    || | || || ||||| | |||| || || | | | || ||||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || |    
T  41027585 agcgtataagcggtttga-tctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgcta 41027683  T
Q  642 ggaggaagactctgactgctatggatgttgtttat 676  Q
    |||| |||||| | |||||||||||||||||||||    
T  41027684 ggagaaagactgttactgctatggatgttgtttat 41027718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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