View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_high_5 (Length: 519)

Name: NF19842_high_5
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_high_5
NF19842_high_5
[»] chr5 (42 HSPs)
chr5 (251-510)||(31281614-31281874)
chr5 (250-510)||(31284898-31285159)
chr5 (218-509)||(31279135-31279427)
chr5 (275-485)||(31317564-31317775)
chr5 (227-503)||(31643536-31643813)
chr5 (262-509)||(31407072-31407320)
chr5 (262-479)||(31475621-31475839)
chr5 (275-508)||(31505547-31505781)
chr5 (262-509)||(40842973-40843221)
chr5 (275-452)||(31395965-31396143)
chr5 (252-510)||(31493781-31494040)
chr5 (89-195)||(31279501-31279607)
chr5 (89-206)||(31332168-31332285)
chr5 (89-206)||(31380953-31381070)
chr5 (89-204)||(31317327-31317442)
chr5 (89-204)||(31368541-31368656)
chr5 (275-509)||(31416196-31416431)
chr5 (95-195)||(31281408-31281508)
chr5 (206-360)||(31368709-31368863)
chr5 (89-187)||(31284686-31284784)
chr5 (362-485)||(31332424-31332548)
chr5 (19-93)||(31368447-31368520)
chr5 (90-204)||(40843330-40843444)
chr5 (398-506)||(31330259-31330368)
chr5 (398-506)||(31379041-31379150)
chr5 (90-166)||(31395729-31395805)
chr5 (89-187)||(31288455-31288553)
chr5 (90-204)||(31475948-31476062)
chr5 (89-187)||(31643904-31644002)
chr5 (32-93)||(31284604-31284665)
chr5 (32-93)||(31332087-31332148)
chr5 (32-93)||(31380872-31380933)
chr5 (433-485)||(31368877-31368929)
chr5 (89-206)||(31378675-31378792)
chr5 (433-474)||(31381281-31381322)
chr5 (90-165)||(31416592-31416667)
chr5 (90-165)||(31494169-31494244)
chr5 (398-479)||(31288791-31288873)
chr5 (251-338)||(31288668-31288753)
chr5 (89-189)||(31329893-31329993)
chr5 (19-93)||(31317233-31317306)
chr5 (90-204)||(31407420-31407534)
[»] chr4 (2 HSPs)
chr4 (273-501)||(8039341-8039569)
chr4 (383-473)||(6037673-6037764)
[»] chr3 (2 HSPs)
chr3 (264-459)||(25708632-25708840)
chr3 (98-169)||(25708415-25708486)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 251 - 510
Target Start/End: Original strand, 31281614 - 31281874
Alignment:
251 ttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgcca 350  Q
    |||||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |    
31281614 ttggtattaacaatcacttcgctgtattcctttttctttgataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgccgcctttgcta 31281713  T
351 tcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaa 449  Q
    |||||||||||||||| | ||||||| | | ||| ||||||  |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
31281714 tcatgtcactaagtttgttaaggcaaactcagtgcggattcgtagtggatcttctttacatttttctcggatgtttaattgtgcaactcatgaaggttaa 31281813  T
450 attgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31281814 attgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct 31281874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 250 - 510
Target Start/End: Original strand, 31284898 - 31285159
Alignment:
250 tttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgcc 349  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||||  | ||||||||||||||||||| ||| || |||||||||||  ||||| |     
31284898 tttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctcatttcatgtgcttccttttct 31284997  T
350 atcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggtta 448  Q
    ||||||| | | ||||| ||| ||||| | |  || |||||  |||| ||| |||||||||||||||||||||||||||| || |||||||||||| |||    
31284998 atcatgttaatgagtttgtcacggcaaactcaatgcggatttgaagtcgattttctttacttttttctcggatgtttaattgtgcaactcatgaagatta 31285097  T
449 aattgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct 510  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
31285098 aattgcagttattcattgttggagcaggttttagctactttgttattatacttcgttcttct 31285159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 218 - 509
Target Start/End: Complemental strand, 31279427 - 31279135
Alignment:
218 agaaatctccgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatg 317  Q
    |||| ||| ||||||||||| |||| | ||||||||||||| | ||| ||||| |||||||| |||||||| |||||| |||||||||| ||||| ||||    
31279427 agaagtcttcgattcaaagcacacacagcatatttggtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatg 31279328  T
318 catgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttct 417  Q
     || ||| || |||||||||||  ||||||| ||||||||||| ||||| ||  ||||| | | ||| |||||  |||| ||||||||||||||||||||    
31279327 gatatagcctcatttcatgtgcttcctttgctatcatgtcacttagtttgtcgcggcaaactcagtgcggatttgaagttgatcttctttacttttttct 31279228  T
418 cggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttc 509  Q
     |||||| ||| |||||||||||||||| ||||| ||   ||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
31279227 tggatgtctaattgtacaactcatgaagattaaactgttattattcattcttggagctggtttcagctacttgcttattattcttcgttcttc 31279135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 485
Target Start/End: Original strand, 31317564 - 31317775
Alignment:
275 tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc 374  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| |||||||| || |||||||| ||||| |||||||    
31317564 tattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaaggc 31317663  T
375 aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagc 473  Q
    || | | ||| |||||  || | ||||||||||| ||||| || |||||| ||| ||| |||||||||||| |||| ||||||||||| |||||||||||    
31317664 aaactcagtggggatttgaaattgatcttctttattttttcctgggatgtctaattgttcaactcatgaagattaagttgcagttattaattcttggagc 31317763  T
474 tggttttagcta 485  Q
    ||||||||||||    
31317764 tggttttagcta 31317775  T

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Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 227 - 503
Target Start/End: Complemental strand, 31643813 - 31643536
Alignment:
227 cgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtc 326  Q
    ||||||||||| |||| | ||||||||||||||| |||||| ||  ||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |    
31643813 cgattcaaagcacacacagcatatttggtattaacaatcacttcgttatattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcc 31643714  T
327 taatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgttt 426  Q
    | ||||| |||||  ||||||| ||||||||||| ||||| || | |||| |   ||| |||||  || | ||||||||||||||||| || |||||| |    
31643713 tcatttcttgtgcttcctttgctatcatgtcacttagtttgtcgacgcaaactgagtgcggatttgaattcgatcttctttactttttccttggatgtct 31643614  T
427 aa-tgtacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttattattcttcg 503  Q
    || ||| |||||||||||| ||||| |||  ||||||||||||||||| ||||| |||||| |  ||||| |||||||    
31643613 aattgtccaactcatgaagattaaactgcccttattcattcttggagcgggtttcagctacctgattattgttcttcg 31643536  T

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Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 262 - 509
Target Start/End: Complemental strand, 31407320 - 31407072
Alignment:
262 aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta 361  Q
    |||||||||  | ||||| |||||||||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||| ||||||||| |     
31407320 aatcacctctgtctattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcttgatttcatgtgccgcctttgctatcatgtcaatg 31407221  T
362 agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat 460  Q
    || || ||||||||| | | ||||||| || |||||||||||||||||||||| || |||||| ||| | | |||||||||||| ||||| |||| |||     
31407220 agcttgtcaaggcaatctcagtgtggaatcgaagtggatcttctttactttttccttggatgtctaattatgcaactcatgaagattaaactgcaattag 31407121  T
461 tcattcttggagctggttttagctactttgttattattcttcgttcttc 509  Q
    ||||| ||||||| ||||| ||||| | | |||||||| | ||||||||    
31407120 tcattgttggagcaggtttcagctattctcttattattatacgttcttc 31407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 262 - 479
Target Start/End: Complemental strand, 31475839 - 31475621
Alignment:
262 aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta 361  Q
    |||||||||  | ||||| |||| ||| ||||||||| | ||||||||||||||||| | ||| || ||||| ||||| |||||||| |||||||||||     
31475839 aatcacctctgtctattcattttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcactg 31475740  T
362 agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat 460  Q
    ||||| || |||||| | | |||||||||| |||||||||||||||||||||||||||||||| ||| |||   |||||||||| |||||||| ||||||    
31475739 agtttctcgaggcaatctcagtgtggattcgaagtggatcttctttacttttttctcggatgtctaactgtgttactcatgaagattaaattggagttat 31475640  T
461 tcattcttggagctggttt 479  Q
    ||||| ||||||| |||||    
31475639 tcattattggagcaggttt 31475621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 275 - 508
Target Start/End: Complemental strand, 31505781 - 31505547
Alignment:
275 tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc 374  Q
    |||||||||||||  |||||| |||| ||||| ||||||||||||| ||| || |||||| ||||  ||||||| |||||||| || ||||| ||  |||    
31505781 tattcctttttctccgataaaatgattaatgggaaaccagatgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtcgcggc 31505682  T
375 aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttattcattcttggagc 473  Q
    || | | ||| |||||  | ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||    
31505681 aaactcagtgcggatttgaggtggatcttctttacttttttctcggatgtttaattgtacaactaatgaagattaaattgcagttattcattgttggagc 31505582  T
474 tggttttagctactttgttattattcttcgttctt 508  Q
    |||||| || || |   |||||||| |||||||||    
31505581 tggtttcagttattcccttattattattcgttctt 31505547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 262 - 509
Target Start/End: Complemental strand, 40843221 - 40842973
Alignment:
262 aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta 361  Q
    |||||||||  | ||||| |||| ||| ||||||||| | ||||||||||||||||| | ||| || ||||| ||||| |||||||| |||||||||||     
40843221 aatcacctctgtctattcgttttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcactg 40843122  T
362 agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat 460  Q
    ||||| || |||||| | |  ||||||||| ||||||||||||||||||||||||| |||||| ||| |||   |||||||||| ||||||| |||||||    
40843121 agtttgtcgaggcaatctcattgtggattcgaagtggatcttctttacttttttcttggatgtctaactgtgttactcatgaagattaaattccagttat 40843022  T
461 tcattcttggagctggttttagctactttgttattattcttcgttcttc 509  Q
    ||||| ||||||| ||||| |  ||||   |||||||| ||||||||||    
40843021 tcattattggagcaggtttgatttactcccttattatttttcgttcttc 40842973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 452
Target Start/End: Original strand, 31395965 - 31396143
Alignment:
275 tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc 374  Q
    |||||||||||||  |||||| | |||||||||||||||||||||| |||||||||||||||||| |||||| | || |||||||| || || || ||||    
31395965 tattcctttttctcagataaaattatgaatggaaaaccagatgcatatagtctaatttcatgtgctgccttttctatgatgtcacttagcttgtcgaggc 31396064  T
375 aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaatt 452  Q
    ||   | |||||||||  ||||||||||| | ||||||| |||||||||||||| |||||||||||||||| |||||||    
31396065 aaattcagtgtggatttgaagtggatcttatgtacttttatctcggatgtttaattgtacaactcatgaagattaaatt 31396143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 252 - 510
Target Start/End: Complemental strand, 31494040 - 31493781
Alignment:
252 tggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccat 351  Q
    ||||||||| |||||||||  | ||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||  ||||||| |||||||| ||    
31494040 tggtattaacaatcacctctgtctattcatttttctttggtaaagtggtgaatggaaaaccagatgcatatagtctaataacatgtgctgcctttgctat 31493941  T
352 catgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaa 450  Q
    |||||| || || || || || |||   | ||| |||||  |||| |||||| |||||||||  || |||| ||||| ||||||||||| |||| |||||    
31493940 catgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatttacttttacctaggatatttaattgtacaactcacgaagattaaa 31493841  T
451 ttgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct 510  Q
    || | |||||  ||| |||||| | ||| |||||||| | ||||||||||||| ||||||    
31493840 ttactgttatctattgttggagtttgttatagctactgtcttattattcttcggtcttct 31493781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 31279607 - 31279501
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    ||||| |||||||||||||||||||||||||||| | || ||||||| |||||||||||||| || ||||||||||| ||| |||||| |||||||||||    
31279607 ccaaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatt 31279508  T
189 tcttgaa 195  Q
    |||||||    
31279507 tcttgaa 31279501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31332168 - 31332285
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||||| |||||||||||| || || |||||||  ||||||||||| |||| ||||||||||| ||  |||||| |||||||||||    
31332168 ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatt 31332267  T
189 tcttgaaaatatttctct 206  Q
    | ||||||||||||||||    
31332268 tgttgaaaatatttctct 31332285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31380953 - 31381070
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||||| |||||||||||| || || |||||||  ||||||||||| | || ||||||||||||||  |||||| |||||||||||    
31380953 ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatt 31381052  T
189 tcttgaaaatatttctct 206  Q
    | ||||||||||||||||    
31381053 tgttgaaaatatttctct 31381070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 31317327 - 31317442
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||||| |||||||||||| || || ||||||||||||| |||||  |||| |||||||| || ||| |||||| |||||||||||    
31317327 ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaatt 31317426  T
189 tcttgaaaatatttct 204  Q
    | ||||||||||||||    
31317427 tgttgaaaatatttct 31317442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 31368541 - 31368656
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||||| |||||||||||| || || ||||||||||||| |||||| |||| |||||||| || ||| |||||| |||||| ||||    
31368541 ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaatt 31368640  T
189 tcttgaaaatatttct 204  Q
    | ||||||||||||||    
31368641 tgttgaaaatatttct 31368656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 275 - 509
Target Start/End: Complemental strand, 31416431 - 31416196
Alignment:
275 tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc 374  Q
    ||||| ||||||| ||||||| | |||||||||||||||||||||| || ||||||||| ||| |  | ||| | || |||||||| || || || ||||    
31416431 tattcatttttctctgataaaattatgaatggaaaaccagatgcatatactctaatttcgtgtacttctttttctatgatgtcacttagcttgtcgaggc 31416332  T
375 aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttattcattcttggagc 473  Q
    ||   | |||||||||  |||| |||||| | ||||||| ||| ||||||||||| ||||||||||||||| ||||||||  ||||   ||| ||||||     
31416331 aaattcagtgtggatttgaagttgatcttatgtacttttatctaggatgtttaattgtacaactcatgaagattaaattgtcgttagctattgttggagt 31416232  T
474 tggttttagctactttgttattattcttcgttcttc 509  Q
    | ||| |||||||| ||||||||||||||| |||||    
31416231 ttgttatagctactgtgttattattcttcggtcttc 31416196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 31281408 - 31281508
Alignment:
95 gtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatttcttga 194  Q
    ||||| || ||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||||||||||| |||||| ||| |||||||| ||||    
31281408 gtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttga 31281507  T
195 a 195  Q
    |    
31281508 a 31281508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 360
Target Start/End: Original strand, 31368709 - 31368863
Alignment:
206 ttgcaacattgtagaaatctccgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatg 305  Q
    |||||||||| ||||| ||||||||||||||| ||     ||| | ||||||| | | |||| | | | ||||||||||||| | ||||||| |||||||    
31368709 ttgcaacattctagaagtctccgattcaaagctcattcggcatttctggtattgacactcactttaatctattcctttttctctaataaagtcatgaatg 31368808  T
306 gaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcact 360  Q
    | ||||||||||||| |||||||||||||||||| |||||||| || ||||||||    
31368809 ggaaaccagatgcatatagtctaatttcatgtgctgcctttgctattatgtcact 31368863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 31284686 - 31284784
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat 187  Q
    ||||| |||||||||||||| |||||||||||| ||  |||||||||  |||||||||||||||| ||||||||||| ||| |||||| ||| ||||||    
31284686 ccaaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaat 31284784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 362 - 485
Target Start/End: Original strand, 31332424 - 31332548
Alignment:
362 agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttat 460  Q
    ||||| ||||||||| | | ||| |||||| || | ||||||||||| ||||| || ||| |  |||| || |||||||||||| |||||||||||||||    
31332424 agtttgtcaaggcaaactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttat 31332523  T
461 tcattcttggagctggttttagcta 485  Q
    ||||||||||||| |||||||||||    
31332524 tcattcttggagcaggttttagcta 31332548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31368447 - 31368520
Alignment:
19 ggtctcactctaaactccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa 93  Q
    ||||||||||| | |||||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||    
31368447 ggtctcactctca-ctccatctttgaaattaatccttacacacttgacacaacatggcacatattctaatccaaa 31368520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 40843444 - 40843330
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt 189  Q
    ||||||| ||||||||||| || ||||||||||||  | ||||||| ||||||||||||||||| ||||||||||| ||| | |||| | | ||||||||    
40843444 caaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaattt 40843345  T
190 cttgaaaatatttct 204  Q
     ||||| ||| ||||    
40843344 gttgaagataattct 40843330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 506
Target Start/End: Original strand, 31330259 - 31330368
Alignment:
398 gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttatta 496  Q
    |||||||| || ||| |||| |||||| ||||| | |||||||||||| |||||||| | ||||||||||||||||| | ||||||||| ||| ||||||    
31330259 gatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcagtttttagctattttcttatta 31330358  T
497 ttcttcgttc 506  Q
    |||| |||||    
31330359 ttctccgttc 31330368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 506
Target Start/End: Original strand, 31379041 - 31379150
Alignment:
398 gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttatta 496  Q
    |||||||| || ||| |||| |||||| ||||| | |||||||||||| |||||||| | ||||||||||||||||| | ||||||||| ||| ||||||    
31379041 gatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcagtttttagctattttcttatta 31379140  T
497 ttcttcgttc 506  Q
    |||| |||||    
31379141 ttctccgttc 31379150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 31395729 - 31395805
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaat 166  Q
    ||||||| ||||||||||| || | |||||||||| || |||||||||||||||||||||| || ||||||||||||    
31395729 caaaggtatggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaat 31395805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 31288455 - 31288553
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat 187  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||  | | ||||| |||| | ||||||||||||||| ||| || ||| ||||||    
31288455 ccaaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaat 31288553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 31476062 - 31475948
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt 189  Q
    ||||||| ||||||||||| |||||||||||||||  | |||||||  |||||||||||||||| |||||||| || ||| | |||| | | ||||||||    
31476062 caaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaattt 31475963  T
190 cttgaaaatatttct 204  Q
     ||||| ||| ||||    
31475962 gttgaagataattct 31475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 31644002 - 31643904
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat 187  Q
    |||||||| ||||||||||| |||||||||||| || || |||||||  ||||||||||||| || ||||||||||| ||| | |||| ||| ||||||    
31644002 ccaaaggtatggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaat 31643904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31284604 - 31284665
Alignment:
32 actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa 93  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||||| ||||||||||||    
31284604 actccatctttgaaattaatccttacacatttgacacaacatggcacatattctaatccaaa 31284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31332087 - 31332148
Alignment:
32 actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa 93  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||||| ||||||||||||    
31332087 actccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaa 31332148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31380872 - 31380933
Alignment:
32 actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa 93  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||||| ||||||||||||    
31380872 actccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaa 31380933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 31368877 - 31368929
Alignment:
433 caactcatgaaggttaaattgcagttattcattcttggagctggttttagcta 485  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||||||||    
31368877 caactcatgaagattaagttgcagttattaattcttggagctggttttagcta 31368929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31378675 - 31378792
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||| | || |||||| ||||| || |||||||  ||||  ||||||| || ||||||||||| ||| |||||| ||| |||||||    
31378675 ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt 31378774  T
189 tcttgaaaatatttctct 206  Q
    | || || ||| ||||||    
31378775 tgttcaagataattctct 31378792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 31381281 - 31381322
Alignment:
433 caactcatgaaggttaaattgcagttattcattcttggagct 474  Q
    |||||||||||| |||||||||||||||||||||||||||||    
31381281 caactcatgaagattaaattgcagttattcattcttggagct 31381322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 31416667 - 31416592
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaa 165  Q
    |||| |||||||||||||||||||||| ||| |||  | |||||||  |||||||||||||||| ||||| |||||    
31416667 caaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgctctaagctcttctttcaa 31416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 31494244 - 31494169
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaa 165  Q
    |||| ||||||||||||||  |||||| ||||||| |||||||| |  |||||||||||||||| ||||| |||||    
31494244 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgttcaa 31494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 31288791 - 31288873
Alignment:
398 gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttt 479  Q
    ||||||||||| | ||| || |||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||||| |||||    
31288791 gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaattgcagttattcatttttggagcaggttt 31288873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 31288668 - 31288753
Alignment:
251 ttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtg 338  Q
    |||||||| | |||||||||||| ||||| |||||||| ||||||||  |||||  ||||||| |||||| |||||| |||| |||||    
31288668 ttggtatttacaatcacctcactgtattcatttttcttcgataaagtagtgaat--aaaaccatatgcatatagtctcatttgatgtg 31288753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 31329893 - 31329993
Alignment:
89 ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt 188  Q
    |||||||||||||||||| | || ||| || ||||| || |||||||  ||||  ||||||| || ||||||||||| ||| |||||| ||| |||||||    
31329893 ccaaaggtgtggagatttctgggattttctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt 31329992  T
189 t 189  Q
    |    
31329993 t 31329993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31317233 - 31317306
Alignment:
19 ggtctcactctaaactccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa 93  Q
    ||||||||||| | ||| |||||||||||||||| |||||||| ||| |||||||||  |||  |||||||||||    
31317233 ggtctcactctca-ctctatctttgaaattaatccttacacacttgacacaacatggtgcatactctaatccaaa 31317306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 31407534 - 31407420
Alignment:
90 caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt 189  Q
    |||| |||||||||||||| |||||||||||||||  | ||||| |  | ||||||||||| ||  ||||||||||  || | |||| | | ||||||||    
31407534 caaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgctctcagcacttccttcaaccatctatttggaaattggaattt 31407435  T
190 cttgaaaatatttct 204  Q
     ||||| ||||||||    
31407434 gttgaagatatttct 31407420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 501
Target Start/End: Original strand, 8039341 - 8039569
Alignment:
273 tatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaag 372  Q
    ||||||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||||||||| |  ||||| | ||||| ||||| | ||| |  ||    
8039341 tatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgag 8039440  T
373 gcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttgga 471  Q
     |||   | ||| |||||| ||||| ||||  | |||| || |||| ||||||||| |||||||||||| ||| ||||||||  |||  | ||| |||||    
8039441 acaaattcagtgcggattcgaagtgaatctcatgtactcttatctc-gatgtttaattgtacaactcataaagattaaattgtcgttgattattgttgga 8039539  T
472 gctggttttagctactttgttattattctt 501  Q
    | | ||| |||||||| | |||||||||||    
8039540 gtttgttatagctactgtcttattattctt 8039569  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 473
Target Start/End: Complemental strand, 6037764 - 6037673
Alignment:
383 tgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagc 473  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||| ||| |||   |||||||| | || ||||||||||||||| | |||||||    
6037764 tgtggattcgaagtgaatcttttttacttttttctcagatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagc 6037673  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 459
Target Start/End: Original strand, 25708632 - 25708840
Alignment:
264 tcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaag 363  Q
    |||||||| | ||||| ||| | | |||||||||| ||||||  ||||||||||| | ||| || ||||||||||| |||||||| ||||||||||| ||    
25708632 tcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcctttgctatcatgtcactcag 25708731  T
364 tttatc------------aaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaa 450  Q
    ||| ||             || ||| | | |||||||||  |||| ||||||||||| |||||||| |||||| ||| ||| |||||||||||||| |||    
25708732 tttgtcgagacaaactgagagacaaactcagtgtggatttgaagttgatcttctttatttttttcttggatgtctaattgtgcaactcatgaaggtaaaa 25708831  T
451 ttgcagtta 459  Q
    |||||||||    
25708832 ttgcagtta 25708840  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 25708415 - 25708486
Alignment:
98 tggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattat 169  Q
    ||||||||||| || |||||||||||| || ||||||| || ||||||||||| || ||||| || ||||||    
25708415 tggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaattat 25708486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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