View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_12 (Length: 361)
Name: NF19842_low_12
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 24282939 - 24283304
Alignment:
| Q |
1 |
tgatgtgtttcaggtgtcctaattgtagaagtacatttcaaatctatcgcacacgatagcaccaaatactattcaatattcatagaaaaacttatctttt |
100 |
Q |
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|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24282939 |
tgatgtttttcaggtgtcctaattgtggaagtccatttcaaatctatcgcacacgatagcaccaaatactattcaatattcatagaaaaacttatctttt |
24283038 |
T |
|
| Q |
101 |
gaggtaacactagt-------------acaaagcgatgacgttgagaaataaa----caccattgttgaaagttaattagaaccaaacccgaggaatgcg |
183 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24283039 |
gaggtaacactagttaggattgaggatacaaagtgatgacgttgagaaataaagaagtaccattgttgaaagttaattagaaacaaacccgaggaatgcg |
24283138 |
T |
|
| Q |
184 |
acttgggggatggaaagcaagatgataaaattataccatgggttgttcatcgacaccttgaggacgcaacttctttttaaagggtagtaatgtaagatcc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24283139 |
acttgggggatggaaagcaagatgataaaattataccatgggttattcattgacaccttgaggacgcgacttctttttaaagggtagtaatgtaagatcc |
24283238 |
T |
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| Q |
284 |
atagtttagttttagctagtgctagggttttagactgttgaaagtaggatttttgttgtgaaccta |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24283239 |
atagtttagttttagctagtgctagggttttagactgttgaaagtaggatttttgtcgtgaaccta |
24283304 |
T |
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