View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_low_16 (Length: 339)

Name: NF19842_low_16
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_low_16
NF19842_low_16
[»] chr4 (3 HSPs)
chr4 (51-327)||(25744555-25744831)
chr4 (51-327)||(25741021-25741297)
chr4 (1-37)||(25744499-25744535)
[»] chr1 (3 HSPs)
chr1 (118-312)||(12514625-12514819)
chr1 (197-327)||(12510825-12510955)
chr1 (282-327)||(12514839-12514884)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 51 - 327
Target Start/End: Original strand, 25744555 - 25744831
Alignment:
Q  51 gaggaaatattttatatacttaacaacccttcatgattgtttctgcagattggttggagttgccgggtgctttgatacttttgattgttgtatctcctga 150  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744555 gaggaaatattctatacacttaacaacccttcatgattgtttctgcagattggttggagttgccgggtgctttgatacttttgattgttgtatctcctga 25744654  T
Q  151 tctagttgcaagcacctttagaaacgaccttgttggagtaattgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744655 tctagttgcaagcacctttagaaacgaccttgttggagtaattgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt 25744754  T
Q  251 ttcagaaactccttcactagagcaaatggcgtatcaaattccattggcataattcttctgttagtctaccccatctg 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744755 ttcagaaactccttcactagagcaaatggcgtatcaaattccattggcataattcttctgttagtctaccccatctg 25744831  T

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Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 51 - 327
Target Start/End: Original strand, 25741021 - 25741297
Alignment:
Q  51 gaggaaatattttatatacttaacaacccttcatgattgtttctgcagattggttggagttgccgggtgctttgatacttttgattgttgtatctcctga 150  Q
    |||||||||||  |||||| |||  || |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25741021 gaggaaatattgaatatacataattactctttctgattgtttctgcagattggttggagttgccgggtgctttgatactcttgattgttgtatctcctga 25741120  T
Q  151 tctagttgcaagcacctttagaaacgaccttgttggagtaattgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt 250  Q
    |||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25741121 tctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt 25741220  T
Q  251 ttcagaaactccttcactagagcaaatggcgtatcaaattccattggcataattcttctgttagtctaccccatctg 327  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  25741221 ttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctattagtctaccccgtctg 25741297  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25744499 - 25744535
Alignment:
Q  1 ctagattcatccactgttgattcaattcattcttcat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  25744499 ctagattcatccactgttgattcaattcattcttcat 25744535  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 312
Target Start/End: Original strand, 12514625 - 12514819
Alignment:
Q  118 tgctttgatacttttgattgttgtatctcctgatctagttgcaagcacctttagaaacgaccttgttggagtaattgtgtgccttgtcattgcatgttat 217  Q
    ||||||||| ||| | ||||||||  |||| |||||| |||||| ||||||||||| |||    |||||  |  | || |||||||||||||||||||||    
T  12514625 tgctttgattcttcttattgttgttgctcccgatctatttgcaaacacctttagaagcgatgaagttggcttggtagtatgccttgtcattgcatgttat 12514724  T
Q  218 ttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactagagcaaatggcgtatcaaattccattggcataattcttctgtt 312  Q
    ||||||||||| || ||||| |||||||||||||| ||| | || || || | |||  ||||  |||||||| | ||||||||||||||||||||    
T  12514725 ttgctacaagaacaaattcgggcatctggtggttttagagattctttaacaaaagctcatggaatatcaaatacaattggcataattcttctgtt 12514819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 327
Target Start/End: Original strand, 12510825 - 12510955
Alignment:
Q  197 tgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactagagcaaatggcgtatcaaattccattg 296  Q
    |||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||||| | |||  ||||| | |||||| | ||||    
T  12510825 tgccttatcattgcatgttatttgctgcaagaacatattcgggcatccggtggctttagagattcattcacaaaagcttatggcatgtcaaatacaattg 12510924  T
Q  297 gcataattcttctgttagtctaccccatctg 327  Q
    |||||||||||||| || |||||||||||||    
T  12510925 gcataattcttctgctaatctaccccatctg 12510955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 12514839 - 12514884
Alignment:
Q  282 tatcaaattccattggcataattcttctgttagtctaccccatctg 327  Q
    |||||||| | |||||||||||||||||| || |||||||||||||    
T  12514839 tatcaaatacaattggcataattcttctggtaatctaccccatctg 12514884  T

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