View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_low_2 (Length: 837)

Name: NF19842_low_2
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_low_2
NF19842_low_2
[»] chr2 (14 HSPs)
chr2 (529-715)||(20127225-20127410)
chr2 (528-715)||(42701990-42702176)
chr2 (774-824)||(42701871-42701921)
chr2 (540-659)||(26068901-26069019)
chr2 (774-829)||(20127100-20127155)
chr2 (544-672)||(3454361-3454489)
chr2 (526-588)||(27848332-27848394)
chr2 (540-650)||(20126195-20126304)
chr2 (525-650)||(3453330-3453454)
chr2 (540-588)||(33076254-33076302)
chr2 (541-650)||(42700961-42701069)
chr2 (529-578)||(3627614-3627663)
chr2 (540-588)||(24607779-24607827)
chr2 (525-588)||(15700742-15700805)
[»] scaffold0203 (4 HSPs)
scaffold0203 (529-715)||(15979-16164)
scaffold0203 (774-829)||(15855-15910)
scaffold0203 (515-650)||(9548-9681)
scaffold0203 (515-650)||(14922-15055)
[»] chr6 (11 HSPs)
chr6 (44-243)||(21223034-21223219)
chr6 (352-529)||(21223357-21223530)
chr6 (541-715)||(20583850-20584021)
chr6 (529-660)||(20583016-20583146)
chr6 (540-671)||(20891816-20891945)
chr6 (529-588)||(15981018-15981077)
chr6 (599-651)||(14456130-14456182)
chr6 (544-587)||(15888985-15889028)
chr6 (529-588)||(15976611-15976670)
chr6 (530-672)||(26444486-26444626)
chr6 (673-714)||(6630996-6631037)
[»] chr1 (18 HSPs)
chr1 (531-715)||(5972136-5972318)
chr1 (528-588)||(22778637-22778697)
chr1 (774-829)||(5972005-5972060)
chr1 (528-668)||(31376527-31376665)
chr1 (530-672)||(24033071-24033211)
chr1 (526-659)||(29183386-29183517)
chr1 (529-651)||(1532510-1532632)
chr1 (528-588)||(16276964-16277024)
chr1 (525-650)||(5971081-5971205)
chr1 (528-659)||(24037901-24038029)
chr1 (528-588)||(16273728-16273788)
chr1 (527-660)||(43914904-43915034)
chr1 (528-588)||(1531633-1531693)
chr1 (621-672)||(43916177-43916227)
chr1 (538-588)||(46432462-46432512)
chr1 (538-588)||(50334726-50334776)
chr1 (602-659)||(22776572-22776629)
chr1 (527-588)||(24032030-24032091)
[»] chr5 (24 HSPs)
chr5 (540-715)||(12948891-12949065)
chr5 (540-715)||(12934727-12934901)
chr5 (528-672)||(2023330-2023469)
chr5 (526-672)||(2024214-2024357)
chr5 (524-660)||(5014012-5014147)
chr5 (525-709)||(29352485-29352668)
chr5 (518-582)||(4534068-4534132)
chr5 (774-829)||(12934976-12935031)
chr5 (774-829)||(12949133-12949188)
chr5 (524-588)||(16799916-16799980)
chr5 (529-650)||(12935838-12935959)
chr5 (640-707)||(36887184-36887251)
chr5 (542-658)||(183120-183233)
chr5 (624-672)||(38107219-38107266)
chr5 (529-588)||(38107139-38107198)
chr5 (529-583)||(4533132-4533186)
chr5 (540-672)||(42876997-42877129)
chr5 (599-651)||(29993390-29993442)
chr5 (599-650)||(12949996-12950047)
chr5 (641-712)||(20365143-20365214)
chr5 (525-583)||(5034721-5034779)
chr5 (530-583)||(5015131-5015184)
chr5 (527-588)||(5033719-5033780)
chr5 (520-585)||(42876130-42876195)
[»] scaffold0039 (1 HSPs)
scaffold0039 (103-243)||(84552-84697)
[»] chr7 (18 HSPs)
chr7 (526-715)||(17353748-17353935)
chr7 (521-659)||(16957191-16957328)
chr7 (529-658)||(35960135-35960261)
chr7 (528-661)||(17352888-17353019)
chr7 (528-659)||(7314179-7314309)
chr7 (524-588)||(42337063-42337127)
chr7 (185-232)||(3543355-3543402)
chr7 (541-715)||(40659015-40659186)
chr7 (524-585)||(7313065-7313126)
chr7 (528-588)||(46469139-46469199)
chr7 (654-712)||(21939212-21939270)
chr7 (525-578)||(47508954-47509007)
chr7 (526-585)||(5490924-5490983)
chr7 (521-588)||(35959072-35959139)
chr7 (530-588)||(42338150-42338208)
chr7 (530-583)||(12385492-12385545)
chr7 (531-588)||(37628549-37628606)
chr7 (602-651)||(40320483-40320531)
[»] chr4 (24 HSPs)
chr4 (532-660)||(52035079-52035206)
chr4 (352-442)||(32360212-32360304)
chr4 (526-672)||(6047059-6047202)
chr4 (541-715)||(49700426-49700597)
chr4 (527-659)||(1961100-1961231)
chr4 (523-583)||(34155891-34155951)
chr4 (532-650)||(52034154-52034271)
chr4 (525-588)||(56113755-56113818)
chr4 (527-588)||(22813287-22813348)
chr4 (599-659)||(40842061-40842121)
chr4 (528-588)||(56112693-56112753)
chr4 (641-712)||(5304218-5304289)
chr4 (529-588)||(22812632-22812691)
chr4 (544-650)||(34370704-34370809)
chr4 (541-688)||(18667219-18667363)
chr4 (527-588)||(1960892-1960953)
chr4 (524-580)||(40874064-40874120)
chr4 (549-588)||(55780406-55780445)
chr4 (549-588)||(55844586-55844625)
chr4 (540-586)||(8749048-8749094)
chr4 (599-680)||(46170366-46170444)
chr4 (525-586)||(12893220-12893281)
chr4 (528-588)||(18703215-18703276)
chr4 (640-709)||(55038272-55038341)
[»] chr8 (22 HSPs)
chr8 (600-715)||(28301523-28301638)
chr8 (525-671)||(26363514-26363657)
chr8 (530-651)||(23753259-23753379)
chr8 (526-588)||(39688338-39688400)
chr8 (529-660)||(6572361-6572493)
chr8 (599-709)||(41773725-41773835)
chr8 (529-672)||(1192032-1192173)
chr8 (524-588)||(41944349-41944413)
chr8 (526-578)||(44296716-44296768)
chr8 (524-588)||(45519490-45519554)
chr8 (529-659)||(6571325-6571454)
chr8 (599-709)||(1191037-1191146)
chr8 (527-588)||(26831442-26831503)
chr8 (528-585)||(39582001-39582058)
chr8 (524-672)||(41774696-41774841)
chr8 (525-588)||(26830320-26830383)
chr8 (524-583)||(28301653-28301712)
chr8 (529-588)||(45021647-45021706)
chr8 (529-583)||(14055457-14055511)
chr8 (599-661)||(28301412-28301474)
chr8 (530-588)||(45020585-45020643)
chr8 (524-573)||(23410074-23410123)
[»] chr3 (21 HSPs)
chr3 (528-650)||(50296204-50296325)
chr3 (540-662)||(6248379-6248501)
chr3 (540-659)||(40630555-40630673)
chr3 (540-672)||(50297228-50297359)
chr3 (540-650)||(6247394-6247503)
chr3 (599-671)||(38261373-38261444)
chr3 (525-588)||(2213917-2213980)
chr3 (601-672)||(9435480-9435550)
chr3 (529-588)||(37087112-37087171)
chr3 (543-672)||(38262260-38262385)
chr3 (599-672)||(17340539-17340612)
chr3 (526-588)||(21326316-21326378)
chr3 (602-671)||(17341416-17341484)
chr3 (527-588)||(45580105-45580166)
chr3 (640-696)||(941538-941594)
chr3 (528-588)||(37088158-37088218)
chr3 (549-588)||(26723904-26723943)
chr3 (529-588)||(45583256-45583315)
chr3 (529-583)||(37023813-37023867)
chr3 (538-588)||(46673292-46673342)
chr3 (527-588)||(9434442-9434503)
[»] scaffold0008 (1 HSPs)
scaffold0008 (540-659)||(268421-268538)
[»] scaffold0032 (1 HSPs)
scaffold0032 (640-715)||(40171-40246)
[»] scaffold0151 (1 HSPs)
scaffold0151 (540-651)||(38300-38411)
[»] scaffold0446 (1 HSPs)
scaffold0446 (528-588)||(11559-11619)
[»] scaffold1875 (1 HSPs)
scaffold1875 (540-588)||(766-814)
[»] scaffold0062 (2 HSPs)
scaffold0062 (525-588)||(49654-49717)
scaffold0062 (525-588)||(62193-62256)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 529 - 715
Target Start/End: Complemental strand, 20127410 - 20127225
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||          ||||||||||||||||||| ||||||||||    
T  20127410 aggcttaaatgcactttttaccccttaagtttacaaaggttgcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccttatgtttatcccct 20127312  T
Q  629 tttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  20127311 tttgcaaaacctcaattttgactcggtcaacgcatatgtggcacctcacttgagtgagttggatgccacgtgtgtaattttcaaatt 20127225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 528 - 715
Target Start/End: Complemental strand, 42702176 - 42701990
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||||||||          |||||||| |||||||||| |||||||||    
T  42702176 taggcttaaacgcactttttaccccttaagtttacaaaggttgcaattttggtcccctattaaaaaaaat-ggcaaaagcgaccccttatgtttatcccc 42702078  T
Q  628 ttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42702077 ttttgcaaaacctcaattttgactcgatcaacgcatatgtggcacctcacttgagtgagttggatgccacatgtgtaattttcaaatt 42701990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 774 - 824
Target Start/End: Complemental strand, 42701921 - 42701871
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctc 824  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42701921 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctc 42701871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 659
Target Start/End: Original strand, 26068901 - 26069019
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||          ||||||||||| ||| ||| |||| |||||||||||||||     
T  26068901 cactttttaccccttaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgatcccctatgtttacccccttttgcaaaacg 26068999  T
Q  640 tcaattttgactcggtcaac 659  Q
    ||||||||||| | ||||||    
T  26069000 tcaattttgacccagtcaac 26069019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 774 - 829
Target Start/End: Complemental strand, 20127155 - 20127100
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctcactcg 829  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  20127155 gagagtgcacgtgagttctcacaccaccaccgctccctccagcttcatctctctcg 20127100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 544 - 672
Target Start/End: Complemental strand, 3454489 - 3454361
Alignment:
Q  544 ttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaacttcaa 643  Q
    |||| |||| ||||||| |||| |||| |||||||||||||||||          ||||||||||||||||||| |||| |||||| |||||||| ||||    
T  3454489 ttttgccccctaagtttgcaaaagttgtaattttggccccctattaaaaaaaaatggcaaaagtgaccccttatgtttagccccttctgcaaaacctcaa 3454390  T
Q  644 ttttgactcggtcaacgcatatgtggcat 672  Q
    ||||||   |||||||||| | |||||||    
T  3454389 ttttgatcaggtcaacgcagaggtggcat 3454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 27848332 - 27848394
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||  ||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  27848332 tttaggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 27848394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 650
Target Start/End: Original strand, 20126195 - 20126304
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||          |||||||||||||||| || |||| |||||| ||||||||     
T  20126195 cactttttgccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgacccctcatgtttagccccttctgcaaaacc 20126293  T
Q  640 tcaattttgac 650  Q
    |||||||||||    
T  20126294 tcaattttgac 20126304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 650
Target Start/End: Original strand, 3453330 - 3453454
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatc 624  Q
    ||||||||| |||| || ||||| |||| ||||||| |||| |||| ||||||| |||||||||          ||||||||||||||||||| |||| |    
T  3453330 ttttaggctaaaatgcaatttttgccccctaagtttgcaaaagttgaaattttgaccccctattaaaaaaaaa-ggcaaaagtgaccccttatgtttagc 3453428  T
Q  625 cccttttgcaaaacttcaattttgac 650  Q
    ||||| |||||||| |||||||||||    
T  3453429 cccttctgcaaaacctcaattttgac 3453454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 33076302 - 33076254
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  33076302 cactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 33076254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 650
Target Start/End: Original strand, 42700961 - 42701069
Alignment:
Q  541 actttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaactt 640  Q
    |||||||||||| ||||||| |||| |||||||||||| |||||||||          ||||||| |||||||||||  ||| |||||||||||||||      
T  42700961 actttttaccccctaagtttgcaaaggttgcaattttgaccccctatt-aaaaaaaatggcaaaaatgaccccttatgcttagccccttttgcaaaaccc 42701059  T
Q  641 caattttgac 650  Q
    ||||||||||    
T  42701060 caattttgac 42701069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 578
Target Start/End: Original strand, 3627614 - 3627663
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttg 578  Q
    |||||||||  ||||||||||||||||||||| |||| ||||||||||||    
T  3627614 aggcttaaacacactttttaccccttaagtttgcaaaagttgcaattttg 3627663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 24607827 - 24607779
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||    
T  24607827 cactttttgccccctaagtttgcaaaggttgcaattttggccccctatt 24607779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 15700742 - 15700805
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||| || |||||||||  ||||||||||||  ||||||||| ||||||| ||||||||    
T  15700742 ttttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctatt 15700805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 116; Significance: 1e-58; HSPs: 4)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 529 - 715
Target Start/End: Complemental strand, 16164 - 15979
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||| |||          |||||||||||| |||||| ||||||||||    
T  16164 aggcttaaacgcactttttaccccttaagtttacaaaggttgcaattttggcccccaattaaaaaaaat-ggcaaaagtgacaccttatgtttatcccct 16066  T
Q  629 tttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  16065 tttgcaaaacctcaattttgactcggtcaacgcatatgtggcacctcacttgagtgagttggatgccacgtgtgtaattttcaaatt 15979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 774 - 829
Target Start/End: Complemental strand, 15910 - 15855
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctcactcg 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15910 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctctctcg 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 515 - 650
Target Start/End: Original strand, 9548 - 9681
Alignment:
Q  515 tatagtttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgacccct 614  Q
    ||||||||| ||||||||| |||  |||||||| |||| ||||||| |||| ||||||||||||||||||||||          ||||||||||| ||||    
T  9548 tatagttta-ttttaggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgaaccct 9645  T
Q  615 tatatttatccccttttgcaaaacttcaattttgac 650  Q
     || |||| |||||| |||||||| |||||||||||    
T  9646 catgtttagccccttctgcaaaacctcaattttgac 9681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 515 - 650
Target Start/End: Original strand, 14922 - 15055
Alignment:
Q  515 tatagtttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgacccct 614  Q
    ||||||||| ||||||||| |||  |||||||| |||| ||||||| |||| ||||||||||||||||||||||          ||||||||||| ||||    
T  14922 tatagttta-ttttaggctaaaacgcactttttgccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgaaccct 15019  T
Q  615 tatatttatccccttttgcaaaacttcaattttgac 650  Q
     || |||| |||||| |||||||| |||||||||||    
T  15020 catgtttagccccttctgcaaaacctcaattttgac 15055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 21223034 - 21223219
Alignment:
Q  44 tcatgtgaccctcgttccagaaatcgctcttgttaaatcgctcgtgttccagaattcacaccctcgttcctcaaacccaaaacttcaacttctctcgtca 143  Q
    |||||||||||||||||||||||| |||||||||           ||||||||||   ||||||||||||||||||||| ||||||||||||||||||||    
T  21223034 tcatgtgaccctcgttccagaaattgctcttgtt-----------gttccagaat---caccctcgttcctcaaacccataacttcaacttctctcgtca 21223119  T
Q  144 ctcctcaaatccggactcgctactcttcacacccaaaagtatcttgctgctcatctcaaataacaaaagatccatttaattcttcttctattcttcatct 243  Q
    ||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  21223120 ctcctcaaatctggactcgctattcttcacacccaaaaagatcttgctgctcatctcaaataacaaaagattcatgcaattcttcttctattcttcatct 21223219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 352 - 529
Target Start/End: Original strand, 21223357 - 21223530
Alignment:
Q  352 aatacatgacatttgttttatcggtggattcaagggttaatgatgtttaaatttttgt-gtgtattctttgagcaagtgtttttaatttgtgnnnnnnng 450  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||       |    
T  21223357 aatacatgacatttgttttatcggtggattcgagggttaatgatgtttaaatttttgtcgtgtattctttgaccaagtgtttttaatttgtgaaaaaaag 21223456  T
Q  451 nnnnnnnaattcgattatgaaattagcttagcttggtgtttgtgaataacgtaggtttaatgattatagtttaatttta 529  Q
           |||||||||||||||     |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  21223457 tttctttaattcgattatgaaa-----ttagcttggtgtttgtgaataacccaggtttaatgattatagtttaatttta 21223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 541 - 715
Target Start/End: Complemental strand, 20584021 - 20583850
Alignment:
Q  541 actttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaactt 640  Q
    |||||||||||  ||||||| |||| |||||||||||| |||||||||          |||||||||||||||| ||||||| | ||||||||||||||     
T  20584021 actttttaccctctaagtttgcaaaagttgcaattttgaccccctattaaaaaaaat-ggcaaaagtgacccctcatattta-ctccttttgcaaaactc 20583924  T
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||||   ||||||| |||||||||  ||||||||||||||||| ||||||||||||||| || |||||    
T  20583923 caattttgactaa-tcaacgcttatgtggcacttcacttgagtgagttgggtgccacatgtgtaatatttaaatt 20583850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 529 - 660
Target Start/End: Original strand, 20583016 - 20583146
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    |||||||||  ||||||||| ||| |||||||  ||| |||||||||||| |||||||||          |||||||||||||||| ||  |||||||||    
T  20583016 aggcttaaacacactttttatcccctaagtttggaaaagttgcaattttgaccccctattaaaaaaaat-ggcaaaagtgacccctcatgattatcccct 20583114  T
Q  629 tttgcaaaacttcaattttgactcggtcaacg 660  Q
    |||| |||||||||||||||||  ||||||||    
T  20583115 tttgtaaaacttcaattttgacctggtcaacg 20583146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 540 - 671
Target Start/End: Original strand, 20891816 - 20891945
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||| ||||||| || | ||||||||||||||||||||||          |||||||||||||||  || | || |||||||||||||||     
T  20891816 cactttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccccatgtctacccccttttgcaaaacg 20891914  T
Q  640 tcaattttgactcggtcaacgcatatgtggca 671  Q
    ||||||||||||| |||||| |||||||||||    
T  20891915 tcaattttgactcagtcaac-catatgtggca 20891945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 15981077 - 15981018
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  ||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  15981077 aggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 15981018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 651
Target Start/End: Complemental strand, 14456182 - 14456130
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgact 651  Q
    |||||||||||||||| || |||| |||||||| ||||| |||||||||||||    
T  14456182 ggcaaaagtgacccctaatgtttacccccttttacaaaatttcaattttgact 14456130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 587
Target Start/End: Original strand, 15888985 - 15889028
Alignment:
Q  544 ttttaccccttaagtttacaaatgttgcaattttggccccctat 587  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||    
T  15888985 ttttgccccctaagtttgcaaatgttgcaattttggccccctat 15889028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 15976611 - 15976670
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  ||||||||||||| ||||||| |||| |||||||||||| | |||||||    
T  15976611 aggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttgacaccctatt 15976670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 672
Target Start/End: Original strand, 26444486 - 26444626
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccctt 629  Q
    |||||||| | |||||| ||||  ||||||| |||| || |||||||||||||||||||          |||||||||||||||  || |||| | ||||    
T  26444486 ggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccccatgtttacctcctt 26444584  T
Q  630 ttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||  ||||||||||| | |||||| ||||||||||||    
T  26444585 ttgcaaaagctcaattttgacccagtcaac-catatgtggcat 26444626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 714
Target Start/End: Complemental strand, 6631037 - 6630996
Alignment:
Q  673 ctcacttgagtgagttggatgccacatgtgtaattttcaaat 714  Q
    |||||||||||||||||||||||||||| |||| ||| ||||    
T  6631037 ctcacttgagtgagttggatgccacatgcgtaacttttaaat 6630996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 5e-55; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 531 - 715
Target Start/End: Complemental strand, 5972318 - 5972136
Alignment:
Q  531 gcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttt 630  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||          ||||||||||||||||||| ||||||||||||    
T  5972318 gcttaaatgcactttttaccc-ttaagtttacaaaggttgcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccttatgtttatccccttt 5972221  T
Q  631 tgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||    
T  5972220 tgcaaaacctcaattttgactcggtcaacgcatatgtggcaccacacttgagtgagttggacgccacgtgtgtaattttcaaatt 5972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 22778697 - 22778637
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  22778697 taggcttaaatccactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 22778637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 774 - 829
Target Start/End: Complemental strand, 5972060 - 5972005
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctcactcg 829  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  5972060 gagagtgcacgtgagctctcacaccaccacctctccctccagcttcatctctctcg 5972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 668
Target Start/End: Original strand, 31376527 - 31376665
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||||  ||||||| ||||  ||||||| |||| ||||||||||||||||||| ||          |||||||||||||||| || |||| ||||    
T  31376527 taggcttaaacgcacttttcaccctctaagtttgcaaaagttgcaattttggccccct-tttaaaaaaaatggcaaaagtgacccctcatgtttaccccc 31376625  T
Q  628 ttttgcaaaacttcaattttgactcggtcaacgcatatgtg 668  Q
    ||||||||||| ||||||||||||| |||||| ||||||||    
T  31376626 ttttgcaaaacctcaattttgactcagtcaac-catatgtg 31376665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 672
Target Start/End: Complemental strand, 24033211 - 24033071
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccctt 629  Q
    |||||||| | |||||| ||||  ||||||| |||| || |||||||||||||||||||          |||||||||||||||  ||||||| ||||||    
T  24033211 ggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccccatatttaccccctt 24033113  T
Q  630 ttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||| ||||||||||| | |||||| ||||||||||||    
T  24033112 ttgcaaaacctcaattttgacccagtcaac-catatgtggcat 24033071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 659
Target Start/End: Complemental strand, 29183517 - 29183386
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcc 625  Q
    |||| |||||||  ||||||||||||  |||||||  ||| ||||||||||||||||||||||          |||||||||||||||  |||| || ||    
T  29183517 tttatgcttaaacacactttttaccctctaagtttgaaaaagttgcaattttggccccctattaaaaaaaa--ggcaaaagtgaccccccatatataccc 29183420  T
Q  626 ccttttgcaaaacttcaattttgactcggtcaac 659  Q
    ||||||||||||| ||||||||||||| ||||||    
T  29183419 ccttttgcaaaacgtcaattttgactcagtcaac 29183386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 529 - 651
Target Start/End: Complemental strand, 1532632 - 1532510
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    ||||||||| |||||||||||||| ||||||| || | ||||||||||||||||| ||||          |||||||||||||||  || | || |||||    
T  1532632 aggcttaaacccactttttaccccctaagtttgcagaagttgcaattttggccccatattaaaaaaaaatggcaaaagtgaccccccatgtctaccccct 1532533  T
Q  629 tttgcaaaacttcaattttgact 651  Q
    |||||||||  ||||||||||||    
T  1532532 tttgcaaaatgtcaattttgact 1532510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 16277024 - 16276964
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  ||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  16277024 taggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 16276964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 525 - 650
Target Start/End: Original strand, 5971081 - 5971205
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatc 624  Q
    ||||||||| |||| |||||||| |||| ||||||| |||| ||||||||||| ||||||||||          ||||||||||||||||  | |||| |    
T  5971081 ttttaggctaaaatgcactttttgccccctaagtttgcaaaagttgcaattttagccccctatt-aaaaaaaaaggcaaaagtgacccctcctgtttagc 5971179  T
Q  625 cccttttgcaaaacttcaattttgac 650  Q
    ||||| |||||||| |||||||||||    
T  5971180 cccttctgcaaaacctcaattttgac 5971205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 659
Target Start/End: Original strand, 24037901 - 24038029
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||||  ||||||||| ||||||||||| |||| |||||||||||| |||||| ||          |||||||||||||||  || |||| || |    
T  24037901 taggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttgaccccct-tttaaaaaaaatggcaaaagtgacccc--atgtttaccctc 24037997  T
Q  628 ttttgcaaaacttcaattttgactcggtcaac 659  Q
    ||||||||||| ||||||||||| ||||||||    
T  24037998 ttttgcaaaacatcaattttgacccggtcaac 24038029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 16273728 - 16273788
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  ||||||||||||| ||||||| |||| |||||||||||| |||||||||    
T  16273728 taggcttaaactcactttttaccccataagtttgcaaaagttgcaattttgaccccctatt 16273788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 660
Target Start/End: Original strand, 43914904 - 43915034
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccc 626  Q
    |||| ||||||  |||||||  |||| ||||||| |||| ||||||||||||||||||||||          |||||||||||||||  || | || |||    
T  43914904 ttagacttaaacgcacttttcgccccctaagtttgcaaaggttgcaattttggccccctatt--aaaaaaatggcaaaagtgaccccccatgtcta-ccc 43915000  T
Q  627 cttttgcaaaacttcaattttgactcggtcaacg 660  Q
    |||||||||||| |||||||||||| ||||||||    
T  43915001 cttttgcaaaacgtcaattttgacttggtcaacg 43915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 1531633 - 1531693
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  |||||||||| || ||||||| |||| |||||||||||| |||||||||    
T  1531633 taggcttaaactcactttttactccctaagtttgcaaaagttgcaattttgaccccctatt 1531693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 672
Target Start/End: Complemental strand, 43916227 - 43916177
Alignment:
Q  621 tatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    |||||||||||||||||| ||||||||||||| |||||  ||||||||||||    
T  43916227 tatccccttttgcaaaacgtcaattttgactcagtcaa-tcatatgtggcat 43916177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 588
Target Start/End: Complemental strand, 46432512 - 46432462
Alignment:
Q  538 tccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  ||||||||||||  ||||||||| ||||||||||||||||    
T  46432512 tccacttttcgccccttaagtttcaaaatgttgcgattttggccccctatt 46432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 588
Target Start/End: Original strand, 50334726 - 50334776
Alignment:
Q  538 tccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  |||| |||||||  ||||||||||||||||||||||||||    
T  50334726 tccacttttcgccccctaagttttaaaatgttgcaattttggccccctatt 50334776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 659
Target Start/End: Original strand, 22776572 - 22776629
Alignment:
Q  602 aaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaac 659  Q
    ||||||||||||| || | || ||||||||||||||| ||||| ||||||| ||||||    
T  22776572 aaaagtgacccctcatgtctacccccttttgcaaaacatcaatcttgactcagtcaac 22776629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 24032030 - 24032091
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||| |||||||| ||||  ||||||| |||| || |||||||||||| ||||||    
T  24032030 ttaggcttaaacccacttttcaccctctaagtttgcaaaagtagcaattttggccacctatt 24032091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 540 - 715
Target Start/End: Original strand, 12948891 - 12949065
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||||||||     
T  12948891 cactttttatcccttaagtttacaaaggttgcaattttggccccctattaaaaaaaat-ggtaaaagtgaccccttatgtttatccccttttgcaaaacc 12948989  T
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12948990 tcaattttgactcggtcaacgcatatgtagcacctcacttgagtgagttggatgccacgtgtgtaattttcaaatt 12949065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 540 - 715
Target Start/End: Original strand, 12934727 - 12934901
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||||||||          || |||||||||||||||| ||||||||||||||||||||     
T  12934727 cactttttatcccttaagtttacaaaggttgcaattttggtcccctattaaaaaaaat-ggtaaaagtgaccccttatgtttatccccttttgcaaaacc 12934825  T
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12934826 tcaattttgactcggtcaacgcatatgtagcacctcacttgagtgagttggatgccacgtgtgtaattttcaaatt 12934901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 528 - 672
Target Start/End: Original strand, 2023330 - 2023469
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||||||||          |||||||||||||||  |||| || ||||    
T  2023330 taggcttaaacccactatttaccccctaagtttacaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgacccc--atatcta-cccc 2023425  T
Q  628 ttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  2023426 ttttgcaaaacgtcaattttaacttggtcaac-catatgtggcat 2023469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 526 - 672
Target Start/End: Complemental strand, 2024357 - 2024214
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcc 625  Q
    |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||  ||||||||          ||||||| ||| ||||||| | || ||    
T  2024357 tttaggcttaaacccactttttaccccctaagtttgcaaaagttgcaattttgttcccctatt--aaaaaaatggcaaaaatgatcccttatgtctaccc 2024260  T
Q  626 ccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||||||    
T  2024259 ccttttgcaaaacgtcaattttgactcagtcaac-cgtatgtggcat 2024214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 524 - 660
Target Start/End: Original strand, 5014012 - 5014147
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttat 623  Q
    |||||||||||||| | ||||||||||| |||||||| |||| |||| |||||||| | ||||||          |||||||||||||||| || ||||     
T  5014012 attttaggcttaaacctactttttaccctttaagtttgcaaaagttgtaattttggtctcctattaaaaaaaat-ggcaaaagtgacccctcatgtttag 5014110  T
Q  624 ccccttttgcaaaacttcaattttgactcggtcaacg 660  Q
    ||||||||||||||| |||||||||||  ||||||||    
T  5014111 ccccttttgcaaaacctcaattttgacctggtcaacg 5014147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 525 - 709
Target Start/End: Original strand, 29352485 - 29352668
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatc 624  Q
    ||||||||||||| |||||||| ||||  ||| ||| |||| || |||||||||||||||||||          ||||||| |||||||  ||||||| |    
T  29352485 ttttaggcttaaacccacttttcaccctctaaatttgcaaaagtagcaattttggccccctattaaaaaaaat-ggcaaaaatgaccccccatatttacc 29352583  T
Q  625 cccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaatttt 709  Q
    |||||||||||||  | |||||||||| ||||||||| |||||| ||  |||||| ||||| | ||||||||  |||||| ||||    
T  29352584 cccttttgcaaaagcttaattttgactaggtcaacgcttatgtgtcacatcacttaagtgattaggatgccaactgtgtattttt 29352668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 582
Target Start/End: Complemental strand, 4534132 - 4534068
Alignment:
Q  518 agtttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccc 582  Q
    |||||| |||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||    
T  4534132 agtttatttttaggcttaaattcactttttaccccctaagtttgcaaaagttgcaattttggccc 4534068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 774 - 829
Target Start/End: Original strand, 12934976 - 12935031
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctcactcg 829  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  12934976 gagagtgcacgtgagttctcacaccaccacctctccctccaacttcttctctctcg 12935031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 774 - 829
Target Start/End: Original strand, 12949133 - 12949188
Alignment:
Q  774 gagagtgcacgtgagttctcacaccaccacctctccctccagcttcatctcactcg 829  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  12949133 gagagtgcacgtgagttctcacaccaccacctctccctccaacttcttctctctcg 12949188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 16799980 - 16799916
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||||| |||||||||  ||||||||||| |||| |||||||||||| |||||||||    
T  16799980 attttaggcttaaacccactttttgtcccttaagtttgcaaaagttgcaattttgaccccctatt 16799916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 650
Target Start/End: Complemental strand, 12935959 - 12935838
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    ||||| |||| |||||||| |||| ||||||| |||| ||||||||| ||| ||||||||          |||||||||||||||| || |||| |||||    
T  12935959 aggctaaaatgcactttttgccccctaagtttgcaaaagttgcaattatggtcccctattaaaaaaaaatggcaaaagtgacccctcatgtttagcccct 12935860  T
Q  629 tttgcaaaacttcaattttgac 650  Q
    | |||||||| |||||||||||    
T  12935859 tctgcaaaacctcaattttgac 12935838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 707
Target Start/End: Complemental strand, 36887251 - 36887184
Alignment:
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaatt 707  Q
    ||||||||||  |||||||| |||| ||| || ||||||| |||||||||||||||||||||||||||    
T  36887251 tcaattttgagccggtcaacacatacgtgacacctcacttaagtgagttggatgccacatgtgtaatt 36887184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 658
Target Start/End: Complemental strand, 183233 - 183120
Alignment:
Q  542 ctttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaacttc 641  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||||          |||||||||||||||  || | || ||||||||||||||| ||    
T  183233 ctttttgccccttaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgacccc--atgtctacccccttttgcaaaacgtc 183137  T
Q  642 aattttgactcggtcaa 658  Q
    ||||||||||| |||||    
T  183136 aattttgactcagtcaa 183120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 672
Target Start/End: Original strand, 38107219 - 38107266
Alignment:
Q  624 ccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  38107219 ccccttttgcaaaacgtcaattttgactcggtcaac-catatgtggcat 38107266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 38107139 - 38107198
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||||||||||||| | ||||||| ||||  ||||||||||| |||||||||    
T  38107139 aggcttaaatccactttttacctcctaagtttgcaaaaattgcaattttgaccccctatt 38107198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 583
Target Start/End: Original strand, 4533132 - 4533186
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    |||||||||  ||||||||||||| ||||||| |||| |||||||||||||||||    
T  4533132 aggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcccc 4533186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 672
Target Start/End: Complemental strand, 42877129 - 42876997
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| || ||||||||| |||| |||| ||||||| |||||||||          ||||||||| |||||| || ||||  ||||| ||||||||     
T  42877129 cactttttgcctcttaagtttgcaaaagttgtaattttgaccccctattaaaaaaaaatggcaaaagtaacccctcatgtttagtcccttctgcaaaaca 42877030  T
Q  640 tcaattttgactcggtcaacgcatatgtggcat 672  Q
    |||||||||||  |||||||||| | |||||||    
T  42877029 tcaattttgacaaggtcaacgcagaggtggcat 42876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 651
Target Start/End: Original strand, 29993390 - 29993442
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgact 651  Q
    |||||||||||||||  || |||||||| ||||||||||| ||||||||||||    
T  29993390 ggcaaaagtgaccccccatgtttatcccattttgcaaaacctcaattttgact 29993442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 650
Target Start/End: Complemental strand, 12950047 - 12949996
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgac 650  Q
    |||||||||||||||| || |||| |||||| |||||||| |||||||||||    
T  12950047 ggcaaaagtgacccctcatgtttagccccttctgcaaaacctcaattttgac 12949996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 712
Target Start/End: Complemental strand, 20365214 - 20365143
Alignment:
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaa 712  Q
    |||||||||| ||  ||||||| |||||||| ||||||| |||||||||||||  |  ||||||||||||||    
T  20365214 caattttgacccgaacaacgcacatgtggcacctcacttaagtgagttggatgttatgtgtgtaattttcaa 20365143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 525 - 583
Target Start/End: Complemental strand, 5034779 - 5034721
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    ||||||||||||||  ||||||  |||| |||||||| ||||||||| |||||||||||    
T  5034779 ttttaggcttaaatgtacttttggccccctaagtttaaaaatgttgcgattttggcccc 5034721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 5015184 - 5015131
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    ||||||||  ||||||||| |||||||||||  ||| |||||||||||||||||    
T  5015184 ggcttaaactcactttttaacccttaagtttgtaaaagttgcaattttggcccc 5015131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 5033719 - 5033780
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||  ||||||  |||| |||||||| ||||||||| ||||||||||| ||||    
T  5033719 ttaggcttaaatgtacttttggccccctaagtttaaaaatgttgcgattttggccccttatt 5033780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 585
Target Start/End: Original strand, 42876130 - 42876195
Alignment:
Q  520 tttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccct 585  Q
    ||||||||||| |||||| | |||||| ||||||||||| | |||| |||| |||||| |||||||    
T  42876130 tttaattttagacttaaacctacttttcaccccttaagtattcaaaagttgtaattttagccccct 42876195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 84552 - 84697
Alignment:
Q  103 accctcgttcctcaaacccaaaacttcaactt--ctctcgtcactcctcaaatccggactcgctactcttcacacccaaaagtatcttgctgctcatctc 200  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||    
T  84552 accctcgttcctcaaacccaaaacttcaacttttctctcgtcactcctcaaatccagactcgctactcttcacacccaaaaggatcttgttgctcatctc 84651  T
Q  201 a---aataacaaaagatccatttaattcttcttctattcttcatct 243  Q
    |   ||||||||||||||||| ||||||||||||||||||||||||    
T  84652 aaataataacaaaagatccatgtaattcttcttctattcttcatct 84697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 526 - 715
Target Start/End: Complemental strand, 17353935 - 17353748
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcc 625  Q
    ||||||||||||   ||||||||| |  ||||||| |||| ||| ||||||||||||||||||          |||||||||||||||| || |||| ||    
T  17353935 tttaggcttaaacgtactttttactctctaagtttgcaaaagttacaattttggccccctattaaaaaaaat-ggcaaaagtgacccctcatgtttaccc 17353837  T
Q  626 ccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||||| |||| |||||||||||||||||| |||||    
T  17353836 ccttttgcaaaactccaattttgact-ggtcaacgcttatgtggcacttcacttgagtgaattgggtgccacatgtgtaatttttaaatt 17353748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 521 - 659
Target Start/End: Complemental strand, 16957328 - 16957191
Alignment:
Q  521 ttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatt 620  Q
    ||||||||||||| |||  ||||||||||||| ||||||| |||| ||||||||||||||||||||||          ||||||||||| ||| ||| ||    
T  16957328 ttaattttaggctaaaacgcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgatcccctatgtt 16957230  T
Q  621 tatccccttttgcaaaacttcaattttgactcggtcaac 659  Q
    || ||||||||||||||| ||||||||||| | ||||||    
T  16957229 tacccccttttgcaaaacgtcaattttgacccagtcaac 16957191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 658
Target Start/End: Complemental strand, 35960261 - 35960135
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    ||||||||| |||||||||||||| ||| ||| |||| ||||||||||| ||||||||||          |||||||||||||||  || |||| |||||    
T  35960261 aggcttaaacccactttttaccccctaattttgcaaaagttgcaattttagccccctatt-aaaaaaaatggcaaaagtgacccc--atgtttagcccct 35960165  T
Q  629 tttgcaaaacttcaattttgactcggtcaa 658  Q
    |||||||||| |||||||||||| ||||||    
T  35960164 tttgcaaaacgtcaattttgacttggtcaa 35960135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 528 - 661
Target Start/End: Original strand, 17352888 - 17353019
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||||  ||||||||| ||| ||||||| |||| |||| ||||||||| |||||||          || ||||||||||||| || |||| ||||    
T  17352888 taggcttaaacacactttttatcccctaagtttgcaaaagttgtaattttggcgccctattaaaaaaat--ggtaaaagtgacccctcatgtttaccccc 17352985  T
Q  628 ttttgcaaaacttcaattttgactcggtcaacgc 661  Q
    |||||||||||| ||||||||||| |||||||||    
T  17352986 ttttgcaaaactccaattttgacttggtcaacgc 17353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 528 - 659
Target Start/End: Complemental strand, 7314309 - 7314179
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||||  ||||||||||||| ||||||| |||| ||||||||||||||||||| ||          ||||||||||||||   || |||||||||    
T  7314309 taggcttaaacacactttttaccccctaagtttgcaaaagttgcaattttggccccct-tttaaaaaaaatggcaaaagtgaccctccatgtttatcccc 7314211  T
Q  628 ttttgcaaaacttcaattttgactcggtcaac 659  Q
    |||| |||||| ||||||||||| | ||||||    
T  7314210 ttttacaaaacctcaattttgacccagtcaac 7314179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 42337063 - 42337127
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||||  ||||||||||||| ||||||| |||| |||||||||||||| |||||||    
T  42337063 attttaggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcaccctatt 42337127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 3543402 - 3543355
Alignment:
Q  185 tcttgctgctcatctcaaataacaaaagatccatttaattcttcttct 232  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3543402 tcttcctgctcatctcaaataacaaaagatccatgtaattcttcttct 3543355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 715
Target Start/End: Original strand, 40659015 - 40659186
Alignment:
Q  541 actttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaactt 640  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||| ||          | ||||||||| |||| || |||| | ||||||| |||| ||    
T  40659015 actttttaccccctaagtttacaaaagttgcaatttttgccccctttt--aaaaaaatgacaaaagtgatccctcatgtttagctccttttgtaaaattt 40659112  T
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||  |  ||||||| |  |||||||| ||||||||||| ||||||||||||| |||||| |||| |||||    
T  40659113 caattttagcctggtcaacac-catgtggcacctcacttgagtaagttggatgccacgtgtgtattttttaaatt 40659186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 524 - 585
Target Start/End: Original strand, 7313065 - 7313126
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccct 585  Q
    ||||| ||||||||  || |||||||||||||||||| |||| |||||||||||||||||||    
T  7313065 atttttggcttaaactcattttttaccccttaagtttgcaaaagttgcaattttggccccct 7313126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 46469139 - 46469199
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  |||||| |||||||||||||| |||| ||||||||||| ||||||||||    
T  46469139 taggcttaaacacactttctaccccttaagtttgcaaaagttgcaattttagccccctatt 46469199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 712
Target Start/End: Complemental strand, 21939270 - 21939212
Alignment:
Q  654 gtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaa 712  Q
    ||||||||| |||||||| ||||||| ||||||| ||| ||||| ||||||||||||||    
T  21939270 gtcaacgcacatgtggcacctcacttaagtgagtaggacgccacgtgtgtaattttcaa 21939212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 578
Target Start/End: Complemental strand, 47509007 - 47508954
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttg 578  Q
    ||||||||||||||||| |||||| || |||||||| |||| ||||||||||||    
T  47509007 ttttaggcttaaatccattttttatcctttaagtttgcaaaagttgcaattttg 47508954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 585
Target Start/End: Complemental strand, 5490983 - 5490924
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccct 585  Q
    ||||||||||||| ||||||| ||||| || ||||  ||| |||||||||||||||||||    
T  5490983 tttaggcttaaatgcacttttcaccccctatgtttcaaaaagttgcaattttggccccct 5490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 588
Target Start/End: Original strand, 35959072 - 35959139
Alignment:
Q  521 ttaattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||||||||  |||||||  |||| ||||||| |||| ||||||||||||| ||| ||||    
T  35959072 ttaattttaggcttaaactcacttttcgccccctaagtttgcaaaggttgcaattttggtcccttatt 35959139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 42338208 - 42338150
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||  |||||||| |||| ||||||| |||| ||||||||||||||| ||||||    
T  42338208 ggcttaaactcactttttgccccctaagtttgcaaaagttgcaattttggcctcctatt 42338150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 12385545 - 12385492
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    ||||||||  ||||||||||||| |||||||||||| ||||  |||||||||||    
T  12385545 ggcttaaacgcactttttaccccctaagtttacaaaagttgacattttggcccc 12385492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 588
Target Start/End: Complemental strand, 37628606 - 37628549
Alignment:
Q  531 gcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||| |||||||||  || ||||||| |||| |||| |||||||||||||||||    
T  37628606 gcttaaattcactttttaatccctaagtttgcaaaagttgtaattttggccccctatt 37628549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 40320483 - 40320531
Alignment:
Q  602 aaaagtgaccccttatatttatccccttttgcaaaacttcaattttgact 651  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  40320483 aaaagtgaccccc-atatttagccccttttgcaaaacatcaattttgact 40320531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 532 - 660
Target Start/End: Complemental strand, 52035206 - 52035079
Alignment:
Q  532 cttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccctttt 631  Q
    |||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||          ||||||| |||||||| || |||| ||||||||    
T  52035206 cttaaacccactttttaccccttaaatttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaaatgacccctcatgtttagcccctttt 52035108  T
Q  632 gcaaaacttcaattttgactcggtcaacg 660  Q
    ||||||| |||||||||||| ||||||||    
T  52035107 gcaaaacctcaattttgacttggtcaacg 52035079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 32360304 - 32360212
Alignment:
Q  352 aatacatgacatttgttttatcggtggattcaagggttaatgatgtttaaat-ttttgt-gtgtattctttgagcaagtgtttttaatttgtg 442  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| || ||| |||||| ||||||| |||| || |||||||||||||||||    
T  32360304 aatacatgacatttgttttattggtggattcgagggttaatgatgattgaatgttttgtcgtgtattatttgtgctagtgtttttaatttgtg 32360212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 526 - 672
Target Start/End: Original strand, 6047059 - 6047202
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcc 625  Q
    |||| ||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||          ||||||| ||||| ||||| | || ||    
T  6047059 tttatgcttaaacccactttttaccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaaatgacctcttatgtcta-cc 6047156  T
Q  626 ccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||||||    
T  6047157 ccttttgcaaaacgtcaattttgactcagtcaac-cgtatgtggcat 6047202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 541 - 715
Target Start/End: Original strand, 49700426 - 49700597
Alignment:
Q  541 actttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaactt 640  Q
    ||||||||||||||||||||||||| |||||||||||   ||||| ||          ||||||||| | |||| || |||| | ||||||| ||||||     
T  49700426 actttttaccccttaagtttacaaaagttgcaatttttatccccttttaaaaaaat--ggcaaaagtaatccctcatgtttagcgccttttgtaaaactc 49700523  T
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    ||||||||| | |||||| ||  |||||||| ||||||||||||||||||||||||| |||||| |||| |||||    
T  49700524 caattttgatttggtcaatgcc-atgtggcacctcacttgagtgagttggatgccacgtgtgtattttttaaatt 49700597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 659
Target Start/End: Complemental strand, 1961231 - 1961100
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccc 626  Q
    ||||||| || | ||||||||||||| ||||||| |||| ||||||||||||||||||||||          ||||||||||| ||| ||| | || |||    
T  1961231 ttaggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgatcccctatgtctacccc 1961133  T
Q  627 cttttgcaaaacttcaattttgactcggtcaac 659  Q
     ||||||||||| ||||||||||||| ||||||    
T  1961132 tttttgcaaaacgtcaattttgactcagtcaac 1961100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 523 - 583
Target Start/End: Original strand, 34155891 - 34155951
Alignment:
Q  523 aattttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    |||||||||||||||  ||||||||||||| |||||||||||| ||||||||||| |||||    
T  34155891 aattttaggcttaaacacactttttaccccctaagtttacaaaagttgcaattttagcccc 34155951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 532 - 650
Target Start/End: Original strand, 52034154 - 52034271
Alignment:
Q  532 cttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccctttt 631  Q
    |||||| |||||||||| ||||||||||| |||| | ||||||||||||||||||||          | ||||||||||||||||| || |  |||||||    
T  52034154 cttaaacccactttttatcccttaagtttgcaaaagctgcaattttggccccctatt-aaaaaaaatgacaaaagtgaccccttatgttcagtccctttt 52034252  T
Q  632 gcaaaacttcaattttgac 650  Q
    ||||||| |||||||||||    
T  52034253 gcaaaacctcaattttgac 52034271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 588
Target Start/End: Complemental strand, 56113818 - 56113755
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||| ||||||||  ||||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  56113818 tttttggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggccccctatt 56113755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 22813348 - 22813287
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||| |||||||| ||| ||||||||| |||| ||||||||||||| ||||||||    
T  22813348 ttaggcttaaacccacttttgacctcttaagtttgcaaaagttgcaattttggtcccctatt 22813287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 659
Target Start/End: Original strand, 40842061 - 40842121
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaac 659  Q
    ||||||||||||||| ||| |||| ||| ||||||||||| ||||||||||||| ||||||    
T  40842061 ggcaaaagtgaccccctatgtttacccctttttgcaaaacctcaattttgactcagtcaac 40842121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 56112693 - 56112753
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  ||||||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  56112693 taggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttagccccctatt 56112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 641 - 712
Target Start/End: Complemental strand, 5304289 - 5304218
Alignment:
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaa 712  Q
    |||||||||| ||  ||||||| |||||||| ||||||| ||||||||||||| ||  ||||||||||||||    
T  5304289 caattttgacccgaacaacgcacatgtggcacctcacttaagtgagttggatgtcatgtgtgtaattttcaa 5304218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 22812632 - 22812691
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||| |||||||| ||||||||||||| |||| ||||||||||||  ||||||||    
T  22812632 aggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttgatcccctatt 22812691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 544 - 650
Target Start/End: Complemental strand, 34370809 - 34370704
Alignment:
Q  544 ttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaacttcaa 643  Q
    |||| |||| |||||||||||| ||||||||||||||||| ||||          ||||||||||||||||||| |||| |||||| |||||||  ||||    
T  34370809 ttttgccccctaagtttacaaaagttgcaattttggccccttattaaaaaaatt-ggcaaaagtgaccccttatgtttagccccttctgcaaaatctcaa 34370711  T
Q  644 ttttgac 650  Q
    |||||||    
T  34370710 ttttgac 34370704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 688
Target Start/End: Complemental strand, 18667363 - 18667219
Alignment:
Q  541 actttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaactt 640  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||||| ||          ||||||||||||||   ||||||  ||||||| ||||||| |    
T  18667363 actttttaccctttatgtttgcaaaagttgcaattttggccccct-tttaaaaaaaatggcaaaagtgaccctccatattttccccctttagcaaaacct 18667265  T
Q  641 caattttgactcggtcaacgcatatgtggcatctcacttgagtgagtt 688  Q
    ||||||||||| | |  |||| |||||||||  |||||||||||||||    
T  18667264 caattttgactggtt--acgcttatgtggcacttcacttgagtgagtt 18667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 1960892 - 1960953
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||| |||  |||||||||||| |||||||| |||| |||||||||||||| |||||||    
T  1960892 ttaggctaaaacgcactttttacccattaagtttgcaaaagttgcaattttggcaccctatt 1960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 40874120 - 40874064
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggc 580  Q
    |||||||| |||||| ||||||| ||||| ||||||| |||| ||||||||||||||    
T  40874120 attttaggtttaaattcacttttcaccccctaagtttgcaaaagttgcaattttggc 40874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 588
Target Start/End: Original strand, 55780406 - 55780445
Alignment:
Q  549 ccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  55780406 ccccttaagttttcaaatgttgcgattttggccccctatt 55780445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 588
Target Start/End: Original strand, 55844586 - 55844625
Alignment:
Q  549 ccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  55844586 ccccttaagttttcaaatgttgcgattttggccccctatt 55844625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 586
Target Start/End: Complemental strand, 8749094 - 8749048
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggcccccta 586  Q
    ||||||| ||||||||||||| | |||||||| ||||||||||||||    
T  8749094 cacttttgaccccttaagtttgccaatgttgcgattttggcccccta 8749048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 599 - 680
Target Start/End: Original strand, 46170366 - 46170444
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttg 680  Q
    |||||||||||||||  || | || || |||||||||||| ||||||||||||| |||||| | |||||||||| |||||||    
T  46170366 ggcaaaagtgacccc--atgtctaccctcttttgcaaaacgtcaattttgactcagtcaac-cgtatgtggcatgtcacttg 46170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 586
Target Start/End: Complemental strand, 12893281 - 12893220
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccccta 586  Q
    |||||||||||| | |||||||  |||| ||  ||| |||||||||||||||||||||||||    
T  12893281 ttttaggcttaattgcacttttggccccctatcttttcaaatgttgcaattttggcccccta 12893220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 18703215 - 18703276
Alignment:
Q  528 taggcttaaatccactttttacccct-taagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  |||||||||||||  ||||||| |||| |||||||||||||||| |||||    
T  18703215 taggcttaaacacactttttacccccctaagtttgcaaacgttgcaattttggccctctatt 18703276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 709
Target Start/End: Original strand, 55038272 - 55038341
Alignment:
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaatttt 709  Q
    ||||||||||| |  |||||||| |||||||| |||| || ||||||| ||||| ||| |||||||||||    
T  55038272 tcaattttgacccattcaacgcacatgtggcacctcatttaagtgagtaggatgtcacgtgtgtaatttt 55038341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 600 - 715
Target Start/End: Complemental strand, 28301638 - 28301523
Alignment:
Q  600 gcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatc-tcacttgagtgagttggatgccaca 698  Q
    ||||||||||||||| || |||| |||||||||||||||| ||||||||||  |||||||||  |||||||| | ||||||||||||||||||||||||     
T  28301638 gcaaaagtgacccctcatgtttagccccttttgcaaaactccaattttgacctggtcaacgc-catgtggcaccttcacttgagtgagttggatgccacg 28301540  T
Q  699 tgtgtaattttcaaatt 715  Q
     ||||| |||| |||||    
T  28301539 agtgtattttttaaatt 28301523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 671
Target Start/End: Complemental strand, 26363657 - 26363514
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatc 624  Q
    ||||||||| |||  |||||||| |||| ||| ||| || | ||||||||||||||||||||||          |||||||||||||||  |||| || |    
T  26363657 ttttaggctaaaacgcactttttgccccctaaatttgcagaagttgcaattttggccccctattaaaaaaat--ggcaaaagtgacccccaatatctacc 26363560  T
Q  625 cccttttgcaaaacttcaattttgactcggtcaacgcatatgtggca 671  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||    
T  26363559 cccttttgcaaaacgtcaattttgactcagtcaac-catatgtggca 26363514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 530 - 651
Target Start/End: Original strand, 23753259 - 23753379
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccctt 629  Q
    ||||||||  ||||||||||||| |||||||  ||| ||||||||||||||||||||||          ||||||||||||  |  ||||||||||||||    
T  23753259 ggcttaaacacactttttaccccctaagtttgtaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtgacatcccatatttatcccctt 23753357  T
Q  630 ttgcaaaacttcaattttgact 651  Q
    ||||||||| ||||||||||||    
T  23753358 ttgcaaaacgtcaattttgact 23753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 39688338 - 39688400
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  39688338 tttaggcttaaacccacttttgaccccttaagtttgcaaaagttgcaattttggtcccctatt 39688400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 660
Target Start/End: Complemental strand, 6572493 - 6572361
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnn-ggcaaaagtgaccccttatatttatcccc 627  Q
    ||||||||| ||| ||||||||||||| |||| |||| ||| ||||||||||| ||||||           ||||||| |||||||| || |||| ||||    
T  6572493 aggcttaaacccagtttttaccccttaggtttgcaaaagttacaattttggcctcctattaaaaaaaaaatggcaaaaatgacccctcatgtttagcccc 6572394  T
Q  628 ttttgcaaaacttcaattttgactcggtcaacg 660  Q
    ||||||||||| |||||||| ||| ||||||||    
T  6572393 ttttgcaaaacctcaattttaacttggtcaacg 6572361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 709
Target Start/End: Original strand, 41773725 - 41773835
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccaca 698  Q
    |||||||||||| ||  || |||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||  |||||| ||||| | ||||||||      
T  41773725 ggcaaaagtgactccccatgtttacccccttttgcaaaagctcaattttgactaggtcaacgcttatgtgtcacatcacttaagtgattaggatgccaac 41773824  T
Q  699 tgtgtaatttt 709  Q
    |||||| ||||    
T  41773825 tgtgtattttt 41773835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 672
Target Start/End: Complemental strand, 1192173 - 1192032
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    ||||||||| | |||||| ||||  ||||||| |||| || |||||||||||||||||||          |||||||||||||||  || |||| |||||    
T  1192173 aggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttggccccctattaaaaaaaat-ggcaaaagtgaccccccatgtttaccccct 1192075  T
Q  629 tttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    |||||||||  ||||||||||| | |||||| ||||||||||||    
T  1192074 tttgcaaaagctcaattttgacccagtcaac-catatgtggcat 1192032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Original strand, 41944349 - 41944413
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||||| ||||||||||||  ||||||| |||| |||||||||||| || ||||||    
T  41944349 attttaggcttaaattcactttttaccctctaagtttgcaaaagttgcaattttgacctcctatt 41944413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 44296716 - 44296768
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttg 578  Q
    ||||||||||||  ||||||||||||||||||||| |||| ||||||||||||    
T  44296716 tttaggcttaaacgcactttttaccccttaagtttgcaaaagttgcaattttg 44296768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 45519554 - 45519490
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||||||  ||||||||||||  ||| ||| |||| ||||||||||||||||||||||    
T  45519554 attttaggcttaaacgcactttttaccctctaactttgcaaaagttgcaattttggccccctatt 45519490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 659
Target Start/End: Original strand, 6571325 - 6571454
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccct 628  Q
    |||||||||  ||||||||| ||||||||||| |||| ||||||||||||   |||||||          ||||||||||| ||||||| |||| ||| |    
T  6571325 aggcttaaactcactttttatcccttaagtttgcaaaagttgcaattttgattccctattaaaaaaaat-ggcaaaagtgatcccttatgtttagcccat 6571423  T
Q  629 tttgcaaaacttcaattttgactcggtcaac 659  Q
    |||||||||| |||||||||||  |||||||    
T  6571424 tttgcaaaacctcaattttgacctggtcaac 6571454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 709
Target Start/End: Original strand, 1191037 - 1191146
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccaca 698  Q
    |||||||||||||||  || |||| ||| |||||||||| ||||||||||||| | ||||||| |||||| ||  |||||| ||||| | ||||||||      
T  1191037 ggcaaaagtgaccccc-atgtttacccctttttgcaaaagttcaattttgactagttcaacgcttatgtgtcacatcacttaagtgattaggatgccaac 1191135  T
Q  699 tgtgtaatttt 709  Q
    |||||| ||||    
T  1191136 tgtgtattttt 1191146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 26831503 - 26831442
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||  ||||||||||||| ||||||| |||| || | |||||||||||||||||    
T  26831503 ttaggcttaaacacactttttaccccctaagtttgcaaaagtagtaattttggccccctatt 26831442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 585
Target Start/End: Complemental strand, 39582058 - 39582001
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccct 585  Q
    ||||||||||  |||||||||| || ||||||| |||| |||||||||||||||||||    
T  39582058 taggcttaaacacactttttactccctaagtttgcaaaagttgcaattttggccccct 39582001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 672
Target Start/End: Complemental strand, 41774841 - 41774696
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttat 623  Q
    |||||||||||||| | |||||| ||||  ||||||| |||| || ||||||||| |||||||||          |||||||||||||||  |||||||     
T  41774841 attttaggcttaaacctacttttcaccctctaagtttgcaaaagtagcaattttgaccccctattaaaaaaaat-ggcaaaagtgaccccc-atatttac 41774744  T
Q  624 ccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
     |||||||||||||  ||||||||||| | |||||| ||||||||||||    
T  41774743 tcccttttgcaaaagctcaattttgacccagtcaac-catatgtggcat 41774696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 26830320 - 26830383
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||||  ||||||||||||| || |||| |||| || ||||||||| |||||||||    
T  26830320 ttttaggcttaaacacactttttaccccctaggtttgcaaacgtagcaattttgaccccctatt 26830383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 583
Target Start/End: Complemental strand, 28301712 - 28301653
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    ||||||||||||||  ||||||||||| | ||||||| |||| ||||||||||| |||||    
T  28301712 attttaggcttaaacgcactttttacctcctaagtttgcaaaagttgcaattttagcccc 28301653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 45021706 - 45021647
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  ||||||||||||| |||||||  ||| |||||||||||| |||||||||    
T  45021706 aggcttaaactcactttttaccccctaagtttgtaaaagttgcaattttgaccccctatt 45021647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 529 - 583
Target Start/End: Complemental strand, 14055511 - 14055457
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    |||||||||  |||||| |||||| ||||||| |||| |||||||||||||||||    
T  14055511 aggcttaaacacactttctaccccctaagtttgcaaaagttgcaattttggcccc 14055457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 599 - 661
Target Start/End: Original strand, 28301412 - 28301474
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgc 661  Q
    |||||||||| |||||  | |||| |||||||||||||||| ||||||||||  |||||||||    
T  28301412 ggcaaaagtggcccctcgtgtttagccccttttgcaaaactccaattttgacctggtcaacgc 28301474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 588
Target Start/End: Original strand, 45020585 - 45020643
Alignment:
Q  530 ggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||  ||||||||||||  ||||||| |||| ||||||||||| ||||||||||    
T  45020585 ggcttaaactcactttttaccctctaagtttgcaaaagttgcaatttttgccccctatt 45020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 573
Target Start/End: Complemental strand, 23410123 - 23410074
Alignment:
Q  524 attttaggcttaaatccactttttaccccttaagtttacaaatgttgcaa 573  Q
    |||||||| |||||||||||||||||| | ||||||| |||| |||||||    
T  23410123 attttaggtttaaatccactttttacctcctaagtttgcaaaagttgcaa 23410074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 650
Target Start/End: Original strand, 50296204 - 50296325
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatcccc 627  Q
    |||||| |||| |||||||| |||||||||||| |||| ||||||||||||||||||||||          ||||||||| ||||||||| |||| ||||    
T  50296204 taggctaaaatgcactttttgccccttaagtttgcaaaagttgcaattttggccccctatt-aaaaaaaatggcaaaagtaaccccttatgtttagcccc 50296302  T
Q  628 ttttgcaaaacttcaattttgac 650  Q
    ||||||||||| |||||||||||    
T  50296303 ttttgcaaaacctcaattttgac 50296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 662
Target Start/End: Complemental strand, 6248501 - 6248379
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||          |||||||||||||||||||  ||| |||||| ||||||||     
T  6248501 cactttttgccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaaatggcaaaagtgaccccttatggttagccccttctgcaaaacc 6248402  T
Q  640 tcaattttgactcggtcaacgca 662  Q
    |||||||||||  ||||||||||    
T  6248401 tcaattttgaccaggtcaacgca 6248379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 659
Target Start/End: Complemental strand, 40630673 - 40630555
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||           |||||||||| ||| ||| | || |||||||||||||||     
T  40630673 cactttttaccccctaagtttgcaaaagttgcaattttggccccctattaaaaaaaata-gcaaaagtgatcccctatgtctacccccttttgcaaaacg 40630575  T
Q  640 tcaattttgactcggtcaac 659  Q
    ||||||||||||| ||||||    
T  40630574 tcaattttgactcagtcaac 40630555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 672
Target Start/End: Complemental strand, 50297359 - 50297228
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||| ||||          ||||||||||||||||||| |||| |||||| ||||||||     
T  50297359 cactttttgccccctaagtttgcaaaagttgcaattttggccccttattaaaaaaaat-ggcaaaagtgaccccttatgtttagccccttatgcaaaacc 50297261  T
Q  640 tcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||   |||||||||| | |||||||    
T  50297260 tcaattttgatcaggtcaacgcagaggtggcat 50297228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 650
Target Start/End: Original strand, 6247394 - 6247503
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||| ||||||| |||| |||||||||||| |||||||||          ||||||||||||||||||| |||| |||||| ||||||||     
T  6247394 cactttttgccccctaagtttgcaaaagttgcaattttgaccccctattaaaaaaaat-ggcaaaagtgaccccttatgtttagccccttctgcaaaacc 6247492  T
Q  640 tcaattttgac 650  Q
    |||||||||||    
T  6247493 tcaattttgac 6247503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 671
Target Start/End: Original strand, 38261373 - 38261444
Alignment:
Q  599 ggcaaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggca 671  Q
    |||||||||||||||  || | || ||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  38261373 ggcaaaagtgaccccccatgtctacccccttttgcaaaacgtcaattttgactcagtcaac-catatgtggca 38261444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 2213917 - 2213980
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||| |||||||| |||||||| ||||| ||||||| |||| |||||||||||| |||||||||    
T  2213917 tttttggcttaaacccacttttgaccccctaagttttcaaaagttgcaattttgaccccctatt 2213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 601 - 672
Target Start/End: Complemental strand, 9435550 - 9435480
Alignment:
Q  601 caaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    ||||||||||||| ||| |||| ||||||||||||||  ||||||||||| | |||||| ||||||||||||    
T  9435550 caaaagtgaccccctatgtttacccccttttgcaaaagctcaattttgacccagtcaac-catatgtggcat 9435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 588
Target Start/End: Original strand, 37087112 - 37087171
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  ||||||||||||| ||||||| |||| |||||||||||||| |||||||    
T  37087112 aggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttggcaccctatt 37087171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 543 - 672
Target Start/End: Complemental strand, 38262385 - 38262260
Alignment:
Q  543 tttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaacttca 642  Q
    ||||| |||| ||||||| || | ||||||||||||||||||||||          |||||||||||||||  || |||| ||||||||||||||| |||    
T  38262385 tttttgccccctaagtttgcagaagttgcaattttggccccctattaaaaaaaaa-ggcaaaagtgacccc--atgtttacccccttttgcaaaacgtca 38262289  T
Q  643 attttgactcggtcaacgcatatgtggcat 672  Q
    ||||| |||| |||||| ||||||||||||    
T  38262288 attttaactcagtcaac-catatgtggcat 38262260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 672
Target Start/End: Original strand, 17340539 - 17340612
Alignment:
Q  599 ggcaaaagtgaccccttatatttat-ccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggcat 672  Q
    |||||||||||||||  || | ||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  17340539 ggcaaaagtgaccccccatgtctattccccttttgcaaaacgtcaattttgactcagtcaac-catatgtggcat 17340612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 588
Target Start/End: Original strand, 21326316 - 21326378
Alignment:
Q  526 tttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||| || | ||||||| ||||||||||||||| ||| |||||||||||| ||||||||    
T  21326316 tttaggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtcccctatt 21326378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 671
Target Start/End: Complemental strand, 17341484 - 17341416
Alignment:
Q  602 aaaagtgaccccttatatttatccccttttgcaaaacttcaattttgactcggtcaacgcatatgtggca 671  Q
    ||||||||||||  || | || ||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  17341484 aaaagtgaccccccatgtctacccccttttgcaaaacgtcaattttgactcagtcaac-catatgtggca 17341416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 45580105 - 45580166
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||||  |||||||||| || ||||||| |||| ||||||||||||||| ||||||    
T  45580105 ttaggcttaaacacactttttactccctaagtttgcaaaagttgcaattttggcctcctatt 45580166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 640 - 696
Target Start/End: Complemental strand, 941594 - 941538
Alignment:
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgcca 696  Q
    ||||||||||||| ||||| ||| | |||||| ||||||| ||||||||||||||||    
T  941594 tcaattttgactcagtcaatgcacacgtggcacctcacttaagtgagttggatgcca 941538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 588
Target Start/End: Complemental strand, 37088218 - 37088158
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||||||| |||  |||||||||    
T  37088218 taggcttaaattcactttttaccccctaagtttgcaaaagttgcaaattttaccccctatt 37088158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 588
Target Start/End: Complemental strand, 26723943 - 26723904
Alignment:
Q  549 ccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  26723943 ccccctaagtttactaatgttgcaattttggccccctatt 26723904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 588
Target Start/End: Complemental strand, 45583315 - 45583256
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  |||||| || ||| ||||||| |||| ||||||||||||||||||||||    
T  45583315 aggcttaaacacactttctaacccctaagtttgcaaaagttgcaattttggccccctatt 45583256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 529 - 583
Target Start/End: Complemental strand, 37023867 - 37023813
Alignment:
Q  529 aggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggcccc 583  Q
    |||||||||  ||||||||||| | ||||||| |||| |||||||||||||||||    
T  37023867 aggcttaaacacactttttacctcctaagtttgcaaaagttgcaattttggcccc 37023813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 588
Target Start/End: Complemental strand, 46673342 - 46673292
Alignment:
Q  538 tccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||||||||  |||||||||||| |||||||||| |||||| |||||||||    
T  46673342 tccacttttcgccccttaagttttcaaatgttgcgattttgaccccctatt 46673292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 588
Target Start/End: Original strand, 9434442 - 9434503
Alignment:
Q  527 ttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    |||| |||||| |||||||| ||||  ||||||| |||| || |||||||||||||||||||    
T  9434442 ttagacttaaacccacttttcaccctctaagtttgcaaaagtagcaattttggccccctatt 9434503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 659
Target Start/End: Original strand, 268421 - 268538
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||          ||||||||||| ||| ||| | || |||||||||||||||     
T  268421 cactttttacctcttaagtttgcaaaagttgcaattttggccccctatt--aaaaaaatggcaaaagtgatcccctatgtctacccccttttgcaaaacg 268518  T
Q  640 tcaattttgactcggtcaac 659  Q
    ||||||||||||| ||||||    
T  268519 tcaattttgactcagtcaac 268538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 715
Target Start/End: Original strand, 40171 - 40246
Alignment:
Q  640 tcaattttgactcggtcaacgcatatgtggcatctcacttgagtgagttggatgccacatgtgtaattttcaaatt 715  Q
    |||||||| ||||| | ||||||||||| ||| ||||||||||||| || |||||||| ||||||||||| |||||    
T  40171 tcaattttaactcgattaacgcatatgtagcacctcacttgagtgacttagatgccacgtgtgtaatttttaaatt 40246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 651
Target Start/End: Complemental strand, 38411 - 38300
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctattnnnnnnnnnnggcaaaagtgaccccttatatttatccccttttgcaaaact 639  Q
    |||||||| |||||||||||| || | ||||||||||||||||||||||          ||||||||||||||   || | || |||||||||||||||     
T  38411 cactttttgccccttaagtttgcagaagttgcaattttggccccctattaaaaaaaaatggcaaaagtgaccctccatgtctacccccttttgcaaaacg 38312  T
Q  640 tcaattttgact 651  Q
    ||||||||||||    
T  38311 tcaattttgact 38300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 11559 - 11619
Alignment:
Q  528 taggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||||  ||||||||||||| ||||||| |||| ||||||||||| ||||||||||    
T  11559 taggcttaaactcactttttaccccctaagtttgcaaaagttgcaattttagccccctatt 11619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 766 - 814
Alignment:
Q  540 cactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  766 cacttttcaccccttaagtttcgaaatgttgcgattttggccccctatt 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 49654 - 49717
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||| || |||||||||  ||||||||||||  ||||||||| ||||||| ||||||||    
T  49654 ttttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctatt 49717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 588
Target Start/End: Original strand, 62193 - 62256
Alignment:
Q  525 ttttaggcttaaatccactttttaccccttaagtttacaaatgttgcaattttggccccctatt 588  Q
    ||||||||| || |||||||||  ||||||||||||  ||||||||| ||||||| ||||||||    
T  62193 ttttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctatt 62256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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