View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_27 (Length: 242)
Name: NF19842_low_27
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 5183920 - 5183709
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
5183920 |
agaccgggattacctctgtagttgtactcatcaaagtttgcaaattgtcttgtgctaggtggtgttccagaaaggttgttgtatgacacattgaagattt |
5183821 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||| | || |
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| T |
5183820 |
ctaaagaggtcaacttggttagttcataaggaatcttaccactcaagttattgtatgataagtcaaggctctctatttgggtaagttttgaaaaagttat |
5183721 |
T |
|
| Q |
211 |
tggaatgggacc |
222 |
Q |
| |
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|||||| ||||| |
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|
| T |
5183720 |
tggaataggacc |
5183709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 5197319 - 5197104
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
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|||| |||||||||||||||||| ||||| ||||| ||||||||||| | | | |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5197319 |
agactgggattacctctgtagttatcctcatcaaagtttgcaaactggcctatactaggtggtgttccagaaaggttgttgtatgacacattgaaggttg |
5197220 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
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| |||||| | | |||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
5197219 |
acaaaaagtttagctgggttagttcattgggtatcttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
5197120 |
T |
|
| Q |
211 |
tggaatgggacctgac |
226 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
5197119 |
tggaatgggacctgac |
5197104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 5161637 - 5161426
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||| | || |||||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
5161637 |
agaccgggattacctctgtagctgtcctcaacgaaggttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacgttgaaggttg |
5161538 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||| | || |
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|
| T |
5161537 |
ataaaaaggtcaactgggttagctcataaggtatcttaccactcaagttattgtatgataagtcaaggctctctatttcggtaagatttgaaaacgtaat |
5161438 |
T |
|
| Q |
211 |
tggaatgggacc |
222 |
Q |
| |
|
|||||| ||||| |
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|
| T |
5161437 |
tggaataggacc |
5161426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 5215464 - 5215253
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| | ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
5215464 |
agaccgggattacctctgtaactgtcctcatcaaaacctccaaactgtcctgtactaggtggtgttccagaaaagttgttgtatgatacattgaaggttg |
5215365 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||| | || |
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|
| T |
5215364 |
ataaaaagttcaactgggttagttcatttggtatcttaccactcaagttattgtatgataagtcaaggctctctatttgggtaagatttgaaaaagtaat |
5215265 |
T |
|
| Q |
211 |
tggaatgggacc |
222 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
5215264 |
tggaataggacc |
5215253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 4840944 - 4841159
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| |||| | |||| |||| ||| ||||||||||||||||| || ||||||||||||||||||||| || |
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|
| T |
4840944 |
agaccaggattacctatgtagttttcctcaacaaagcctccaaattgtcctgtactaggtggtgttccagagaggttgttgtatgacacattgaagattt |
4841043 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
4841044 |
ctaaaaagttcaactgggttagttcatttggtatcttaccactcaagttattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
4841143 |
T |
|
| Q |
211 |
tggaatgggacctgac |
226 |
Q |
| |
|
|||||||||||||||| |
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| T |
4841144 |
tggaatgggacctgac |
4841159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 5174578 - 5174367
Alignment:
| Q |
11 |
agaccgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttg |
110 |
Q |
| |
|
||||| ||||||||| ||||||| ||||| |||| | |||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5174578 |
agaccaggattacctatgtagttttcctcaacaaagcctccaaattgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaaggttg |
5174479 |
T |
|
| Q |
111 |
ataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgat |
210 |
Q |
| |
|
| |||||| | | |||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
5174478 |
acaaaaagtttagctgggttagttcattgggtatcttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
5174379 |
T |
|
| Q |
211 |
tggaatgggacc |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5174378 |
tggaatgggacc |
5174367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 4855454 - 4855661
Alignment:
| Q |
15 |
cgggattacctctgtagttgtcctcgtcaaaatttgcaaactgtcttgtgctaggtggtgttccagaaagattgttgtatgacacattgaaggttgataa |
114 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| || ||| |
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|
| T |
4855454 |
cgggattacctctgtagctgtcctcaatgaaggttgcaaactgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaatatttctaa |
4855553 |
T |
|
| Q |
115 |
aaaggtcaactgggttagttcataaggaatcttaccactcaaattattatatgataagtcaagactctctatttgggtaagattggaaaaactgattgga |
214 |
Q |
| |
|
| ||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||||||||||||||| |||||| | |||||| |
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|
| T |
4855554 |
agaggtcaacttggttagttcataaggtatcttaccactcaagttattgtatgataagtcaaggctttctatttgggtaagatttgaaaaagtaattgga |
4855653 |
T |
|
| Q |
215 |
atgggacc |
222 |
Q |
| |
|
|| ||||| |
|
|
| T |
4855654 |
ataggacc |
4855661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 7143729 - 7143568
Alignment:
| Q |
65 |
ctaggtggtgttccagaaagattgttgtatgacacattgaaggttgataaaaaggtcaactgggttagttcataaggaatcttaccactcaaattattat |
164 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||| | || ||||||||| || |||||| | ||| | ||||||| |||| ||| | | |
|
|
| T |
7143729 |
ctaggtggtgttccagaaaggttgttgtaagacacattgaagatatctataaaggtcaagtgacttagttgagaagctaccttaccattcaagttactct |
7143630 |
T |
|
| Q |
165 |
atgataagtcaagactctctatttgggtaagattggaaaaactgattggaatgggacctgac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
7143629 |
atgataagtcaagactctctatttgggtaagattggaaaaagtgattggaataggacctgac |
7143568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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