View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_low_29 (Length: 238)
Name: NF19842_low_29
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15536979 - 15537200
Alignment:
| Q |
1 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaannnnnnnggaagttttggtccattctcaatcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15536979 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaatttttttggaagttttggtccattctcaatcac |
15537078 |
T |
|
| Q |
101 |
aagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537079 |
aagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggat |
15537178 |
T |
|
| Q |
201 |
cttccttcaacaataattgcgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15537179 |
cttccttcaacaataattgcgt |
15537200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 15523898 - 15524108
Alignment:
| Q |
1 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaannnnnnnggaagttttggtccattctcaatcac |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15523898 |
ccatgatcttcctatcttcatcattgaattcatctatcgtcttcagcacttcttcaccatttattattttttttggaagttttggtccattctcaatcac |
15523997 |
T |
|
| Q |
101 |
aagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggat |
200 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
15523998 |
aagccatacttcaaagtcaacagattgtatgaatatcttcataagttccctccactcagttaaatttgtaccatcaaagtatggtggctttgaaatggat |
15524097 |
T |
|
| Q |
201 |
cttccttcaac |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
15524098 |
cttccttcaac |
15524108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 15648974 - 15649184
Alignment:
| Q |
1 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaannnnnnnggaagttttggtccattctcaatcac |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||| ||| |||| |||||||||||||| |||||| |
|
|
| T |
15648974 |
ccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccatttaataatttttttggaatttttggtccattcttaatcac |
15649073 |
T |
|
| Q |
101 |
aagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggat |
200 |
Q |
| |
|
|||||||||| | ||| ||| |||||||||||| |||| || | || |||| ||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15649074 |
aagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcgaagtatggtggctttgaaatggat |
15649173 |
T |
|
| Q |
201 |
cttccttcaac |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
15649174 |
cttccttcaac |
15649184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15658219 - 15658431
Alignment:
| Q |
1 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcac---catttattaannnnnnnggaagttttggtccattctcaat |
97 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| | ||||||||||||||| || |||||||||| |||| |||||||||||||| ||| |
|
|
| T |
15658219 |
ccatgttcttgatatcttcatcattgaattcatcttcagatttcaacacttctcgacgaccatttattaattttttcggaatttttggtccattcttaat |
15658318 |
T |
|
| Q |
98 |
cacaagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacg |
197 |
Q |
| |
|
||||||||||| || ||| ||| |||||||||||| |||| || | || |||| ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
15658319 |
cacaagccaaattttatagtcaactgattgtatgaatatctttgtacgctctttccattcagtacagtttgtaccatcgaagtatggtggctttgaaatg |
15658418 |
T |
|
| Q |
198 |
gatcttccttcaa |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15658419 |
gatcttccttcaa |
15658431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 15611335 - 15611545
Alignment:
| Q |
1 |
ccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaannnnnnnggaagttttggtccattctcaatcac |
100 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | |||||| || |||||||||| ||||| |||| ||| |||||||||| |||||| |
|
|
| T |
15611335 |
ccatgatcttcttatcttcatcattgaattcatcttcagatttctccaactcttcaccatgtattattttttttggaattttcggtccattcttaatcac |
15611434 |
T |
|
| Q |
101 |
aagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaat---ttgtaccatcgaagtatggtggctttgaaacg |
197 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||| |||| ||| | ||| |||||||||| ||| |||||||||||||||||||||||||||||| | |
|
|
| T |
15611435 |
aagccaaagatcgaagtcaacggattgtatgaatatctttatacgctccttccactcagtacaatttgttgtaccatcgaagtatggtggctttgaaatg |
15611534 |
T |
|
| Q |
198 |
gatcttccttc |
208 |
Q |
| |
|
||||| ||||| |
|
|
| T |
15611535 |
gatctcccttc |
15611545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 15628497 - 15628630
Alignment:
| Q |
81 |
tttggtccattctcaatcacaagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgt------accat |
174 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||| ||| |||||||||||| |||| ||| | ||| |||| ||||| ||||||| ||||| |
|
|
| T |
15628497 |
tttggtccattcttaatcacaagccagagatcgaagtcaacggattgtatgaatatctttatacgctccttccattcagtacaatttgttgttgtaccat |
15628596 |
T |
|
| Q |
175 |
cgaagtatggtggctttgaaacggatcttccttc |
208 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |
|
|
| T |
15628597 |
cgaagtatggtggctttgaaatggatctcccttc |
15628630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 15504350 - 15504546
Alignment:
| Q |
13 |
tatcttcatcattgaattcatctaccgatttcaacacttcttcaccatttattaannnnnnnggaagttttggtccattctcaatcacaagccaaacttc |
112 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| || ||| | ||||| ||| | |||| |||||||||||||| ||||||||| |||| || |
|
|
| T |
15504350 |
tatcttcatcattgaattgatcttcagatttcaccaattcattaccatctatcattgttttgggaatttttggtccattcttaatcacaagacaaagatc |
15504449 |
T |
|
| Q |
113 |
gaagttaacagattgtatgaatgtcttcataggttccctccactcagttaaatttgtaccatcgaagtatggtggctttgaaacggatcttccttca |
209 |
Q |
| |
|
|||| || |||||||||||| || | ||| |||| |||| || || |||| ||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
15504450 |
aaagtcaatggattgtatgaatatcattatactttccttccattccgtataattgttaccatcgaagaatggtggctttgaaatggatcgtccttca |
15504546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University