View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_31 (Length: 214)
Name: NF19842_low_31
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 10028267 - 10028441
Alignment:
| Q |
19 |
actagacatatcattgacgatctattacttctggctggtgtttcaggctttccaaaatcattttctttcattacaaatatcttatttaatacactaatgt |
118 |
Q |
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| T |
10028267 |
actagacatatcattgacgatctattacttctggctggtgtttcaggctttccaaaatcattttctttctttacaaatatcttattttatacactaatgt |
10028366 |
T |
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| Q |
119 |
ttatcctcagaaactgagaaaagggaacacttgaactaaaatgttatggatttttatatcgtttatatatctttc |
193 |
Q |
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| T |
10028367 |
ttatcctcagaaactgagaaaagggaacacttgaactaaaatgttacggatttttatatcgtttatatatctttc |
10028441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 10050276 - 10050354
Alignment:
| Q |
115 |
atgtttatcctcagaaactgagaaaagggaacacttgaactaaaatgttatggatttttatatcgtttatatatctttc |
193 |
Q |
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| T |
10050276 |
atgtttatcctcagaaactgagaaaagggaacacttgaactaaaatgttacggatttttatatcgtttatatatctttc |
10050354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 10062345 - 10062381
Alignment:
| Q |
142 |
ggaacacttgaactaaaatgttatggatttttatatc |
178 |
Q |
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| T |
10062345 |
ggaacacttgaactaaaatgttatggacttctatatc |
10062381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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