View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_4 (Length: 531)
Name: NF19842_low_4
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 125 - 426
Target Start/End: Complemental strand, 4918484 - 4918182
Alignment:
| Q |
125 |
cgacatcgggctcaataccgccgcattaacactatttacaagctcatttttggtcaagttgtatcctgttcccatctgcnnnnnnn-tagtgtggaccct |
223 |
Q |
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| T |
4918484 |
cgacatcgatctcaatacagccgcctgtacgctttttacaagatcatttttggtcaagttgtatcctgttcccatctgcaaaaaaaatagtgtggaccct |
4918385 |
T |
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| Q |
224 |
ctaagttatttctcaaataattaaagggaaacaacacatgcctaaatttatttctcaaaccaatttaaaaattggttgtgaaaatgaaaacgagtaataa |
323 |
Q |
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| T |
4918384 |
ctaagttatttctcaaataattaaagggaaacaacacatgcctaaatttatttctcaaaccaatttaaaaattggttgtgaaaatgaaaacgagtaataa |
4918285 |
T |
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| Q |
324 |
agattgcataagctcatgaagtatcatttttcatatagaagaataaaagtttcatttcatatttatttattttgcattgtcattcaccatattgaacttt |
423 |
Q |
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| T |
4918284 |
agattgcataagctcatgaagtatcatttttcatatagaagaataaaagtttcatttcatatttatttattttgcattgttattcaccatattgaacttt |
4918185 |
T |
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| Q |
424 |
aat |
426 |
Q |
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| T |
4918184 |
aat |
4918182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 4918120 - 4918066
Alignment:
| Q |
462 |
tattaactctcaaccgacaac-taaggtatttccacaccacaacttcgaaatttt |
515 |
Q |
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| T |
4918120 |
tattaactctcaaccgacaacctaaggtatttccacaccacaacttcgaaatttt |
4918066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 4895151 - 4895068
Alignment:
| Q |
231 |
atttctcaaataattaaagggaaacaacacatgcctaaatttatttctcaaaccaatttaaaaattggttgtgaaaatgaaaac |
314 |
Q |
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| T |
4895151 |
atttctcaaataattcaagggaaatagtacatgccttaattaatttctcaaatcaattcaaaatttggttgtgaaaaggaaaac |
4895068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 4912730 - 4912655
Alignment:
| Q |
348 |
catttttcatatagaagaataaaagtttcatttcatatttatttattttgcattgtcattcaccatattgaacttt |
423 |
Q |
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| T |
4912730 |
catttttcatatagaagaatgaaagtttcattttgtatttatttattttaaaatgtcatttaccatattgaccttt |
4912655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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