View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_low_5 (Length: 519)
Name: NF19842_low_5
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_5 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 42)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 251 - 510
Target Start/End: Original strand, 31281614 - 31281874
Alignment:
| Q |
251 |
ttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgcca |
350 |
Q |
| |
|
|||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
31281614 |
ttggtattaacaatcacttcgctgtattcctttttctttgataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgccgcctttgcta |
31281713 |
T |
 |
| Q |
351 |
tcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaa |
449 |
Q |
| |
|
|||||||||||||||| | ||||||| | | ||| |||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
31281714 |
tcatgtcactaagtttgttaaggcaaactcagtgcggattcgtagtggatcttctttacatttttctcggatgtttaattgtgcaactcatgaaggttaa |
31281813 |
T |
 |
| Q |
450 |
attgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31281814 |
attgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct |
31281874 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 250 - 510
Target Start/End: Original strand, 31284898 - 31285159
Alignment:
| Q |
250 |
tttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgcc |
349 |
Q |
| |
|
||||||||| | |||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||| ||| || ||||||||||| ||||| | |
|
|
| T |
31284898 |
tttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctcatttcatgtgcttccttttct |
31284997 |
T |
 |
| Q |
350 |
atcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggtta |
448 |
Q |
| |
|
||||||| | | ||||| ||| ||||| | | || ||||| |||| ||| |||||||||||||||||||||||||||| || |||||||||||| ||| |
|
|
| T |
31284998 |
atcatgttaatgagtttgtcacggcaaactcaatgcggatttgaagtcgattttctttacttttttctcggatgtttaattgtgcaactcatgaagatta |
31285097 |
T |
 |
| Q |
449 |
aattgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct |
510 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31285098 |
aattgcagttattcattgttggagcaggttttagctactttgttattatacttcgttcttct |
31285159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 218 - 509
Target Start/End: Complemental strand, 31279427 - 31279135
Alignment:
| Q |
218 |
agaaatctccgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatg |
317 |
Q |
| |
|
|||| ||| ||||||||||| |||| | ||||||||||||| | ||| ||||| |||||||| |||||||| |||||| |||||||||| ||||| |||| |
|
|
| T |
31279427 |
agaagtcttcgattcaaagcacacacagcatatttggtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatg |
31279328 |
T |
 |
| Q |
318 |
catgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttct |
417 |
Q |
| |
|
|| ||| || ||||||||||| ||||||| ||||||||||| ||||| || ||||| | | ||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
31279327 |
gatatagcctcatttcatgtgcttcctttgctatcatgtcacttagtttgtcgcggcaaactcagtgcggatttgaagttgatcttctttacttttttct |
31279228 |
T |
 |
| Q |
418 |
cggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttc |
509 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31279227 |
tggatgtctaattgtacaactcatgaagattaaactgttattattcattcttggagctggtttcagctacttgcttattattcttcgttcttc |
31279135 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 485
Target Start/End: Original strand, 31317564 - 31317775
Alignment:
| Q |
275 |
tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc |
374 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| |||||||| || |||||||| ||||| ||||||| |
|
|
| T |
31317564 |
tattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaaggc |
31317663 |
T |
 |
| Q |
375 |
aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagc |
473 |
Q |
| |
|
|| | | ||| ||||| || | ||||||||||| ||||| || |||||| ||| ||| |||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
31317664 |
aaactcagtggggatttgaaattgatcttctttattttttcctgggatgtctaattgttcaactcatgaagattaagttgcagttattaattcttggagc |
31317763 |
T |
 |
| Q |
474 |
tggttttagcta |
485 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31317764 |
tggttttagcta |
31317775 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 227 - 503
Target Start/End: Complemental strand, 31643813 - 31643536
Alignment:
| Q |
227 |
cgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtc |
326 |
Q |
| |
|
||||||||||| |||| | ||||||||||||||| |||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
31643813 |
cgattcaaagcacacacagcatatttggtattaacaatcacttcgttatattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcc |
31643714 |
T |
 |
| Q |
327 |
taatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgttt |
426 |
Q |
| |
|
| ||||| ||||| ||||||| ||||||||||| ||||| || | |||| | ||| ||||| || | ||||||||||||||||| || |||||| | |
|
|
| T |
31643713 |
tcatttcttgtgcttcctttgctatcatgtcacttagtttgtcgacgcaaactgagtgcggatttgaattcgatcttctttactttttccttggatgtct |
31643614 |
T |
 |
| Q |
427 |
aa-tgtacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttattattcttcg |
503 |
Q |
| |
|
|| ||| |||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||| | ||||| ||||||| |
|
|
| T |
31643613 |
aattgtccaactcatgaagattaaactgcccttattcattcttggagcgggtttcagctacctgattattgttcttcg |
31643536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 262 - 509
Target Start/End: Complemental strand, 31407320 - 31407072
Alignment:
| Q |
262 |
aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta |
361 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||| | |
|
|
| T |
31407320 |
aatcacctctgtctattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcttgatttcatgtgccgcctttgctatcatgtcaatg |
31407221 |
T |
 |
| Q |
362 |
agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat |
460 |
Q |
| |
|
|| || ||||||||| | | ||||||| || |||||||||||||||||||||| || |||||| ||| | | |||||||||||| ||||| |||| ||| |
|
|
| T |
31407220 |
agcttgtcaaggcaatctcagtgtggaatcgaagtggatcttctttactttttccttggatgtctaattatgcaactcatgaagattaaactgcaattag |
31407121 |
T |
 |
| Q |
461 |
tcattcttggagctggttttagctactttgttattattcttcgttcttc |
509 |
Q |
| |
|
||||| ||||||| ||||| ||||| | | |||||||| | |||||||| |
|
|
| T |
31407120 |
tcattgttggagcaggtttcagctattctcttattattatacgttcttc |
31407072 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 262 - 479
Target Start/End: Complemental strand, 31475839 - 31475621
Alignment:
| Q |
262 |
aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta |
361 |
Q |
| |
|
||||||||| | ||||| |||| ||| ||||||||| | ||||||||||||||||| | ||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
31475839 |
aatcacctctgtctattcattttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcactg |
31475740 |
T |
 |
| Q |
362 |
agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat |
460 |
Q |
| |
|
||||| || |||||| | | |||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||| |||||| |
|
|
| T |
31475739 |
agtttctcgaggcaatctcagtgtggattcgaagtggatcttctttacttttttctcggatgtctaactgtgttactcatgaagattaaattggagttat |
31475640 |
T |
 |
| Q |
461 |
tcattcttggagctggttt |
479 |
Q |
| |
|
||||| ||||||| ||||| |
|
|
| T |
31475639 |
tcattattggagcaggttt |
31475621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 275 - 508
Target Start/End: Complemental strand, 31505781 - 31505547
Alignment:
| Q |
275 |
tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc |
374 |
Q |
| |
|
||||||||||||| |||||| |||| ||||| ||||||||||||| ||| || |||||| |||| ||||||| |||||||| || ||||| || ||| |
|
|
| T |
31505781 |
tattcctttttctccgataaaatgattaatgggaaaccagatgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtcgcggc |
31505682 |
T |
 |
| Q |
375 |
aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttattcattcttggagc |
473 |
Q |
| |
|
|| | | ||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
31505681 |
aaactcagtgcggatttgaggtggatcttctttacttttttctcggatgtttaattgtacaactaatgaagattaaattgcagttattcattgttggagc |
31505582 |
T |
 |
| Q |
474 |
tggttttagctactttgttattattcttcgttctt |
508 |
Q |
| |
|
|||||| || || | |||||||| ||||||||| |
|
|
| T |
31505581 |
tggtttcagttattcccttattattattcgttctt |
31505547 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 262 - 509
Target Start/End: Complemental strand, 40843221 - 40842973
Alignment:
| Q |
262 |
aatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcacta |
361 |
Q |
| |
|
||||||||| | ||||| |||| ||| ||||||||| | ||||||||||||||||| | ||| || ||||| ||||| |||||||| ||||||||||| |
|
|
| T |
40843221 |
aatcacctctgtctattcgttttacttcgataaagtggtaaatggaaaaccagatgcttatagcctcatttcttgtgctgcctttgctatcatgtcactg |
40843122 |
T |
 |
| Q |
362 |
agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttat |
460 |
Q |
| |
|
||||| || |||||| | | ||||||||| ||||||||||||||||||||||||| |||||| ||| ||| |||||||||| ||||||| ||||||| |
|
|
| T |
40843121 |
agtttgtcgaggcaatctcattgtggattcgaagtggatcttctttacttttttcttggatgtctaactgtgttactcatgaagattaaattccagttat |
40843022 |
T |
 |
| Q |
461 |
tcattcttggagctggttttagctactttgttattattcttcgttcttc |
509 |
Q |
| |
|
||||| ||||||| ||||| | |||| |||||||| |||||||||| |
|
|
| T |
40843021 |
tcattattggagcaggtttgatttactcccttattatttttcgttcttc |
40842973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 275 - 452
Target Start/End: Original strand, 31395965 - 31396143
Alignment:
| Q |
275 |
tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc |
374 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||| |||||| | || |||||||| || || || |||| |
|
|
| T |
31395965 |
tattcctttttctcagataaaattatgaatggaaaaccagatgcatatagtctaatttcatgtgctgccttttctatgatgtcacttagcttgtcgaggc |
31396064 |
T |
 |
| Q |
375 |
aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaatt |
452 |
Q |
| |
|
|| | ||||||||| ||||||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31396065 |
aaattcagtgtggatttgaagtggatcttatgtacttttatctcggatgtttaattgtacaactcatgaagattaaatt |
31396143 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 252 - 510
Target Start/End: Complemental strand, 31494040 - 31493781
Alignment:
| Q |
252 |
tggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccat |
351 |
Q |
| |
|
||||||||| ||||||||| | ||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||| || |
|
|
| T |
31494040 |
tggtattaacaatcacctctgtctattcatttttctttggtaaagtggtgaatggaaaaccagatgcatatagtctaataacatgtgctgcctttgctat |
31493941 |
T |
 |
| Q |
352 |
catgtcactaagtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaa |
450 |
Q |
| |
|
|||||| || || || || || ||| | ||| ||||| |||| |||||| ||||||||| || |||| ||||| ||||||||||| |||| ||||| |
|
|
| T |
31493940 |
catgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatttacttttacctaggatatttaattgtacaactcacgaagattaaa |
31493841 |
T |
 |
| Q |
451 |
ttgcagttattcattcttggagctggttttagctactttgttattattcttcgttcttct |
510 |
Q |
| |
|
|| | ||||| ||| |||||| | ||| |||||||| | ||||||||||||| |||||| |
|
|
| T |
31493840 |
ttactgttatctattgttggagtttgttatagctactgtcttattattcttcggtcttct |
31493781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 31279607 - 31279501
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | || ||||||| |||||||||||||| || ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
31279607 |
ccaaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaatt |
31279508 |
T |
 |
| Q |
189 |
tcttgaa |
195 |
Q |
| |
|
||||||| |
|
|
| T |
31279507 |
tcttgaa |
31279501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31332168 - 31332285
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || ||||||| ||||||||||| |||| ||||||||||| || |||||| ||||||||||| |
|
|
| T |
31332168 |
ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaatt |
31332267 |
T |
 |
| Q |
189 |
tcttgaaaatatttctct |
206 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
31332268 |
tgttgaaaatatttctct |
31332285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31380953 - 31381070
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || ||||||| ||||||||||| | || |||||||||||||| |||||| ||||||||||| |
|
|
| T |
31380953 |
ccaaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaatt |
31381052 |
T |
 |
| Q |
189 |
tcttgaaaatatttctct |
206 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
31381053 |
tgttgaaaatatttctct |
31381070 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 31317327 - 31317442
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || ||||||||||||| ||||| |||| |||||||| || ||| |||||| ||||||||||| |
|
|
| T |
31317327 |
ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaatt |
31317426 |
T |
 |
| Q |
189 |
tcttgaaaatatttct |
204 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
31317427 |
tgttgaaaatatttct |
31317442 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 31368541 - 31368656
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || ||||||||||||| |||||| |||| |||||||| || ||| |||||| |||||| |||| |
|
|
| T |
31368541 |
ccaaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaatt |
31368640 |
T |
 |
| Q |
189 |
tcttgaaaatatttct |
204 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
31368641 |
tgttgaaaatatttct |
31368656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 275 - 509
Target Start/End: Complemental strand, 31416431 - 31416196
Alignment:
| Q |
275 |
tattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaaggc |
374 |
Q |
| |
|
||||| ||||||| ||||||| | |||||||||||||||||||||| || ||||||||| ||| | | ||| | || |||||||| || || || |||| |
|
|
| T |
31416431 |
tattcatttttctctgataaaattatgaatggaaaaccagatgcatatactctaatttcgtgtacttctttttctatgatgtcacttagcttgtcgaggc |
31416332 |
T |
 |
| Q |
375 |
aagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttattcattcttggagc |
473 |
Q |
| |
|
|| | ||||||||| |||| |||||| | ||||||| ||| ||||||||||| ||||||||||||||| |||||||| |||| ||| |||||| |
|
|
| T |
31416331 |
aaattcagtgtggatttgaagttgatcttatgtacttttatctaggatgtttaattgtacaactcatgaagattaaattgtcgttagctattgttggagt |
31416232 |
T |
 |
| Q |
474 |
tggttttagctactttgttattattcttcgttcttc |
509 |
Q |
| |
|
| ||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
31416231 |
ttgttatagctactgtgttattattcttcggtcttc |
31416196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 31281408 - 31281508
Alignment:
| Q |
95 |
gtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatttcttga |
194 |
Q |
| |
|
||||| || ||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||||||||||| |||||| ||| |||||||| |||| |
|
|
| T |
31281408 |
gtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgttga |
31281507 |
T |
 |
| Q |
195 |
a |
195 |
Q |
| |
|
| |
|
|
| T |
31281508 |
a |
31281508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 360
Target Start/End: Original strand, 31368709 - 31368863
Alignment:
| Q |
206 |
ttgcaacattgtagaaatctccgattcaaagcccacataacatatttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatg |
305 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| || ||| | ||||||| | | |||| | | | ||||||||||||| | ||||||| ||||||| |
|
|
| T |
31368709 |
ttgcaacattctagaagtctccgattcaaagctcattcggcatttctggtattgacactcactttaatctattcctttttctctaataaagtcatgaatg |
31368808 |
T |
 |
| Q |
306 |
gaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcact |
360 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
31368809 |
ggaaaccagatgcatatagtctaatttcatgtgctgcctttgctattatgtcact |
31368863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 31284686 - 31284784
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat |
187 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||| |||||| ||| |||||| |
|
|
| T |
31284686 |
ccaaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaat |
31284784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 362 - 485
Target Start/End: Original strand, 31332424 - 31332548
Alignment:
| Q |
362 |
agtttatcaaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaat-gtacaactcatgaaggttaaattgcagttat |
460 |
Q |
| |
|
||||| ||||||||| | | ||| |||||| || | ||||||||||| ||||| || ||| | |||| || |||||||||||| ||||||||||||||| |
|
|
| T |
31332424 |
agtttgtcaaggcaaactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgcagttat |
31332523 |
T |
 |
| Q |
461 |
tcattcttggagctggttttagcta |
485 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
31332524 |
tcattcttggagcaggttttagcta |
31332548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31368447 - 31368520
Alignment:
| Q |
19 |
ggtctcactctaaactccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa |
93 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
31368447 |
ggtctcactctca-ctccatctttgaaattaatccttacacacttgacacaacatggcacatattctaatccaaa |
31368520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 40843444 - 40843330
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt |
189 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||| | ||||||| ||||||||||||||||| ||||||||||| ||| | |||| | | |||||||| |
|
|
| T |
40843444 |
caaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctatttggaaattggaattt |
40843345 |
T |
 |
| Q |
190 |
cttgaaaatatttct |
204 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
40843344 |
gttgaagataattct |
40843330 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 506
Target Start/End: Original strand, 31330259 - 31330368
Alignment:
| Q |
398 |
gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttatta |
496 |
Q |
| |
|
|||||||| || ||| |||| |||||| ||||| | |||||||||||| |||||||| | ||||||||||||||||| | ||||||||| ||| |||||| |
|
|
| T |
31330259 |
gatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcagtttttagctattttcttatta |
31330358 |
T |
 |
| Q |
497 |
ttcttcgttc |
506 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31330359 |
ttctccgttc |
31330368 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 506
Target Start/End: Original strand, 31379041 - 31379150
Alignment:
| Q |
398 |
gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttttagctactttgttatta |
496 |
Q |
| |
|
|||||||| || ||| |||| |||||| ||||| | |||||||||||| |||||||| | ||||||||||||||||| | ||||||||| ||| |||||| |
|
|
| T |
31379041 |
gatcttctatattttcttctaggatgtctaatgatgcaactcatgaagattaaattgaaattattcattcttggagcagtttttagctattttcttatta |
31379140 |
T |
 |
| Q |
497 |
ttcttcgttc |
506 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31379141 |
ttctccgttc |
31379150 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 31395729 - 31395805
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaat |
166 |
Q |
| |
|
||||||| ||||||||||| || | |||||||||| || |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
31395729 |
caaaggtatggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaat |
31395805 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 31288455 - 31288553
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat |
187 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || ||||||| | | ||||| |||| | ||||||||||||||| ||| || ||| |||||| |
|
|
| T |
31288455 |
ccaaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaat |
31288553 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 31476062 - 31475948
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt |
189 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||| || ||| | |||| | | |||||||| |
|
|
| T |
31476062 |
caaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaactatctatttggaaactggaattt |
31475963 |
T |
 |
| Q |
190 |
cttgaaaatatttct |
204 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
31475962 |
gttgaagataattct |
31475948 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 31644002 - 31643904
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaat |
187 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| || || ||||||| ||||||||||||| || ||||||||||| ||| | |||| ||| |||||| |
|
|
| T |
31644002 |
ccaaaggtatggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaat |
31643904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31284604 - 31284665
Alignment:
| Q |
32 |
actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
31284604 |
actccatctttgaaattaatccttacacatttgacacaacatggcacatattctaatccaaa |
31284665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31332087 - 31332148
Alignment:
| Q |
32 |
actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa |
93 |
Q |
| |
|
||||||||||||||||| |||||||||||| | | |||||||||||||| |||||||||||| |
|
|
| T |
31332087 |
actccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaa |
31332148 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 31380872 - 31380933
Alignment:
| Q |
32 |
actccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa |
93 |
Q |
| |
|
||||||||||||||||| |||||||||||| | | |||||||||||||| |||||||||||| |
|
|
| T |
31380872 |
actccatctttgaaattgatcattacacactttacacaacatggcacatattctaatccaaa |
31380933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 485
Target Start/End: Original strand, 31368877 - 31368929
Alignment:
| Q |
433 |
caactcatgaaggttaaattgcagttattcattcttggagctggttttagcta |
485 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31368877 |
caactcatgaagattaagttgcagttattaattcttggagctggttttagcta |
31368929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 31378675 - 31378792
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||| || ||||||| |||| ||||||| || ||||||||||| ||| |||||| ||| ||||||| |
|
|
| T |
31378675 |
ccaaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
31378774 |
T |
 |
| Q |
189 |
tcttgaaaatatttctct |
206 |
Q |
| |
|
| || || ||| |||||| |
|
|
| T |
31378775 |
tgttcaagataattctct |
31378792 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 433 - 474
Target Start/End: Original strand, 31381281 - 31381322
Alignment:
| Q |
433 |
caactcatgaaggttaaattgcagttattcattcttggagct |
474 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31381281 |
caactcatgaagattaaattgcagttattcattcttggagct |
31381322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 31416667 - 31416592
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaa |
165 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||| | ||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
31416667 |
caaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgctctaagctcttctttcaa |
31416592 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 31494244 - 31494169
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaa |
165 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||| |||||||| | |||||||||||||||| ||||| ||||| |
|
|
| T |
31494244 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgttcaa |
31494169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 31288791 - 31288873
Alignment:
| Q |
398 |
gatcttctttacttttttctcggatgtttaatg-tacaactcatgaaggttaaattgcagttattcattcttggagctggttt |
479 |
Q |
| |
|
||||||||||| | ||| || |||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
31288791 |
gatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaattgcagttattcatttttggagcaggttt |
31288873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 31288668 - 31288753
Alignment:
| Q |
251 |
ttggtattaataatcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtg |
338 |
Q |
| |
|
|||||||| | |||||||||||| ||||| |||||||| |||||||| ||||| ||||||| |||||| |||||| |||| ||||| |
|
|
| T |
31288668 |
ttggtatttacaatcacctcactgtattcatttttcttcgataaagtagtgaat--aaaaccatatgcatatagtctcatttgatgtg |
31288753 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 31329893 - 31329993
Alignment:
| Q |
89 |
ccaaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaatt |
188 |
Q |
| |
|
|||||||||||||||||| | || ||| || ||||| || ||||||| |||| ||||||| || ||||||||||| ||| |||||| ||| ||||||| |
|
|
| T |
31329893 |
ccaaaggtgtggagatttctgggattttctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatt |
31329992 |
T |
 |
| Q |
189 |
t |
189 |
Q |
| |
|
| |
|
|
| T |
31329993 |
t |
31329993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31317233 - 31317306
Alignment:
| Q |
19 |
ggtctcactctaaactccatctttgaaattaatcattacacacctgagacaacatggcacatgttctaatccaaa |
93 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| |||||||| ||| ||||||||| ||| ||||||||||| |
|
|
| T |
31317233 |
ggtctcactctca-ctctatctttgaaattaatccttacacacttgacacaacatggtgcatactctaatccaaa |
31317306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 31407534 - 31407420
Alignment:
| Q |
90 |
caaaggtgtggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattatatctttgaagaatggaattt |
189 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| | ||||| | | ||||||||||| || |||||||||| || | |||| | | |||||||| |
|
|
| T |
31407534 |
caaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgctctcagcacttccttcaaccatctatttggaaattggaattt |
31407435 |
T |
 |
| Q |
190 |
cttgaaaatatttct |
204 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
31407434 |
gttgaagatatttct |
31407420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 501
Target Start/End: Original strand, 8039341 - 8039569
Alignment:
| Q |
273 |
tatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaagtttatcaag |
372 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||||||||| | ||||| | ||||| ||||| | ||| | || |
|
|
| T |
8039341 |
tatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaatttcatgtacatcctttcctatcatttcacttaatttgttgag |
8039440 |
T |
 |
| Q |
373 |
gcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttgga |
471 |
Q |
| |
|
||| | ||| |||||| ||||| |||| | |||| || |||| ||||||||| |||||||||||| ||| |||||||| ||| | ||| ||||| |
|
|
| T |
8039441 |
acaaattcagtgcggattcgaagtgaatctcatgtactcttatctc-gatgtttaattgtacaactcataaagattaaattgtcgttgattattgttgga |
8039539 |
T |
 |
| Q |
472 |
gctggttttagctactttgttattattctt |
501 |
Q |
| |
|
| | ||| |||||||| | ||||||||||| |
|
|
| T |
8039540 |
gtttgttatagctactgtcttattattctt |
8039569 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 473
Target Start/End: Complemental strand, 6037764 - 6037673
Alignment:
| Q |
383 |
tgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaattgcagttattcattcttggagc |
473 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||| ||||| ||| ||| |||||||| | || ||||||||||||||| | ||||||| |
|
|
| T |
6037764 |
tgtggattcgaagtgaatcttttttacttttttctcagatgtctaactgtgttactcatgacgattcaattgcagttattcaatattggagc |
6037673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 459
Target Start/End: Original strand, 25708632 - 25708840
Alignment:
| Q |
264 |
tcacctcactatattcctttttctttgataaagtgatgaatggaaaaccagatgcatgtagtctaatttcatgtgccgcctttgccatcatgtcactaag |
363 |
Q |
| |
|
|||||||| | ||||| ||| | | |||||||||| |||||| ||||||||||| | ||| || ||||||||||| |||||||| ||||||||||| || |
|
|
| T |
25708632 |
tcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagcctcatttcatgtgctgcctttgctatcatgtcactcag |
25708731 |
T |
 |
| Q |
364 |
tttatc------------aaggcaagcacggtgtggattccaagtggatcttctttacttttttctcggatgtttaa-tgtacaactcatgaaggttaaa |
450 |
Q |
| |
|
||| || || ||| | | ||||||||| |||| ||||||||||| |||||||| |||||| ||| ||| |||||||||||||| ||| |
|
|
| T |
25708732 |
tttgtcgagacaaactgagagacaaactcagtgtggatttgaagttgatcttctttatttttttcttggatgtctaattgtgcaactcatgaaggtaaaa |
25708831 |
T |
 |
| Q |
451 |
ttgcagtta |
459 |
Q |
| |
|
||||||||| |
|
|
| T |
25708832 |
ttgcagtta |
25708840 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 25708415 - 25708486
Alignment:
| Q |
98 |
tggagatttgtaggctttgcttcagcttttattggacttgtttgttatgctctaagatcttccttcaattat |
169 |
Q |
| |
|
||||||||||| || |||||||||||| || ||||||| || ||||||||||| || ||||| || |||||| |
|
|
| T |
25708415 |
tggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaattat |
25708486 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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