View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_6 (Length: 434)
Name: NF19842_low_6
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 98 - 421
Target Start/End: Complemental strand, 39811080 - 39810757
Alignment:
| Q |
98 |
ttaatctcaaatactaaatgatcttcaacttcagtatgctaaaaactgcattcttaccgccattctaggcatgtaacgaccatgacaattgacaccacgc |
197 |
Q |
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| T |
39811080 |
ttaatctcaaatactaaatgatcttcaacttcagtatgctaaaaactgcattcttaccgccattctgggcatgtaacgaccatgacaattgacaccacgc |
39810981 |
T |
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| Q |
198 |
ctatcacgggcacgcaaaactttctcaagcttgacatcaaacccatcataaggtccccattgttcatcaattccttgtcttgtactagtgatgacaagtt |
297 |
Q |
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| T |
39810980 |
ctatcacgggcacgcaaaactttttcaagcttgacatcaaacccatcataaagtccccattgttcatcaatttcttgtcttgtactagtgatgacaagtt |
39810881 |
T |
|
| Q |
298 |
ctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttg |
397 |
Q |
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| T |
39810880 |
ctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttg |
39810781 |
T |
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| Q |
398 |
ttctagtttgtttcttccaagtga |
421 |
Q |
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| T |
39810780 |
ttctagtttgtttcttccaagtga |
39810757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 39811221 - 39811128
Alignment:
| Q |
7 |
atcaaagagataactgatatatgctatgcaannnnnnnnnnnnnccaataataagtttgaagacctgaaatactctgaattaattgacatgtta |
100 |
Q |
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| T |
39811221 |
atcaaagagataactgatatatgctatgcaatttttacttttttccaatattaagtttgaagacctaaaatactctgaattaattgatatgtta |
39811128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 151 - 418
Target Start/End: Complemental strand, 15798398 - 15798131
Alignment:
| Q |
151 |
ttaccgccattctaggcatgtaacgaccatgacaattgacaccacgcctatcacgggcacgcaaaactttctcaagcttgacatcaaacccatcataagg |
250 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||||| || | || |||||||| |||||||||||||||||||| || ||||||||| | |
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| T |
15798398 |
ttaccgccatccttggcatgtatcgaccatgacaattgacaccacgtctggctcgagcacgcaatactttctcaagcttgacatcgaatccatcataaag |
15798299 |
T |
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| Q |
251 |
tccccattgttcatcaattccttgtcttgtactagtgatgacaagttctgcagcatccagggaaagctcttctgcttctatccttctcattatcttatac |
350 |
Q |
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|||||| || || |||||| ||||| |||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
15798298 |
tccccactgctcctcaatttcttgttttgtactagtaataacaagttctgcagcatcaagggaaagttcttctgcttctatcctcctcatcatcttatac |
15798199 |
T |
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| Q |
351 |
gttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaag |
418 |
Q |
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| T |
15798198 |
attgaattgatatcttccttcgactggcgtccttgcttaagaagttgttcgagcttgtttcttccaag |
15798131 |
T |
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