View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_7 (Length: 365)
Name: NF19842_low_7
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 352
Target Start/End: Original strand, 4918442 - 4918773
Alignment:
| Q |
21 |
tcttgtaaaaagcgtacaggcggctgtattgagatcgatgtcgtaatgtgaacatgtggtcccactgttcgatgatattataagagatatgtaggtcaaa |
120 |
Q |
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| T |
4918442 |
tcttgtaaaaagcgtacaggcggctgtattgagatcgatgtcgtaatgtgaacatgtggtcccactggtcgatgatattataagagatatgtaggtcaaa |
4918541 |
T |
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| Q |
121 |
atgttaatgtatttagttacggtgttatcttggtcgtatctcaaaatgcattagatgacatggtttacattttcttaagttgaccggtatctcgttagtg |
220 |
Q |
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| T |
4918542 |
atgttaatgtatttagttacggtgttatcttggtcgtatctcaaaatgcattagatgatatgttttacattttctaaagttgaccggtagctcgtcagtg |
4918641 |
T |
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| Q |
221 |
acttagagcgatatcataagagatatttaggtcaaaatgttaatgtatctggttctcggctgcttgaggattgaaattatgtgtgctgtgtctgtgtatt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |
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| T |
4918642 |
acttagagcgatatcataagagatatttaggtcaaaatgttaatgtatctggttctcggctgcttgaggattggaattatatgcgctgtgtctgtgtatt |
4918741 |
T |
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| Q |
321 |
tctgttctggtagcttgttttcggcctttgct |
352 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
4918742 |
tctgttctggtagcttgttttcggcctttgct |
4918773 |
T |
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