View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_low_8 (Length: 363)
Name: NF19842_low_8
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 10041519 - 10041854
Alignment:
| Q |
18 |
taagaaaattacatacaagatatattggttggttcaaccaatgtagtttaattaggctgtttctcacacttcatgggatttttcctatggtgttgagatt |
117 |
Q |
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| T |
10041519 |
taagaaaattacatacaagatatattggttggttcaaccaatgtagtttaattaggctgtttctcacacttcatgggatttttgctatggtgttgagatt |
10041618 |
T |
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| Q |
118 |
agaacgttctcaactttacactttcctctttaaatcactattggatagggatgaatgcaaaaatattcaatagcaatgacattatatatctttttcaact |
217 |
Q |
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| T |
10041619 |
agaacgttctcaactttacactttcctctttaaatcactattggatagggatgaatgcaaaaatattcaatagcaatgacattatatatctttttcaact |
10041718 |
T |
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| Q |
218 |
attgtcaaatgtataatacctaaaaaatttaggattaaatatttctaatgattaatcaaattactatcatttgaatactacattgactcatccgttttgt |
317 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10041719 |
attgtcacatgtataatacttaaaaaatttaggattaaatatttctaatgattaatcaaattactatcatttgaatactacactgactcatccgttttgt |
10041818 |
T |
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| Q |
318 |
gaagctaatcaagcagcatatgctttttctaagtat |
353 |
Q |
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| T |
10041819 |
gaagctaatcaagcagcatatgctttttctaagtat |
10041854 |
T |
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