View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19843_high_16 (Length: 236)
Name: NF19843_high_16
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24484957 - 24485183
Alignment:
| Q |
1 |
atatctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24484957 |
atatctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagtagctcttc |
24485056 |
T |
|
| Q |
101 |
caacatctactgcttcacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattgctaacatcaagtgtttt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
24485057 |
caacatctactgctttacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattactagcatcaagtgtttt |
24485156 |
T |
|
| Q |
201 |
gtttgaaaacaaatggtttttgcataa |
227 |
Q |
| |
|
||| |||||||||||||||||| |||| |
|
|
| T |
24485157 |
gttagaaaacaaatggtttttgtataa |
24485183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24468458 - 24468683
Alignment:
| Q |
1 |
atatctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | |
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|
| T |
24468458 |
atatctttatactcatcagtttcacctgcagagttaacaaaatccatggagaaaaaagtgtttgacaaaacattcaacaaagtcttaaaagcagctttct |
24468557 |
T |
|
| Q |
101 |
caacatctactgcttcacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattgctaacatcaagtgtttt |
200 |
Q |
| |
|
||||||| |||||||||| | ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
24468558 |
caacatccactgcttcaccaaccaagctacttctatcaatatcacataaaagctcttgcagcttcttacacctaagttcattgctagcatcaagagtttt |
24468657 |
T |
|
| Q |
201 |
gtttgaaaacaaatggtttttgcata |
226 |
Q |
| |
|
||| |||||||||| ||||||||||| |
|
|
| T |
24468658 |
gttagaaaacaaattgtttttgcata |
24468683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 41128310 - 41128207
Alignment:
| Q |
54 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttccaacatctactgcttcacaagttaagctgcttctatcaatatcacttaaaag |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||||||||| || ||||||| ||||| ||||||| ||| |||||| ||| ||| |
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|
| T |
41128310 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaag |
41128212 |
T |
|
| Q |
153 |
ctctt |
157 |
Q |
| |
|
|||| |
|
|
| T |
41128211 |
atctt |
41128207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 41144371 - 41144474
Alignment:
| Q |
54 |
aaaagtgtttgacaaaaaattcaatg-aagtcttaaaagcagctcttccaacatctactgcttcacaagttaagctgcttctatcaatatcacttaaaag |
152 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||| |||||||||||||||||||| || ||||||| ||||| ||||||| ||| |||||| ||| ||| |
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|
| T |
41144371 |
aaaagtatatgacaaaaaatt-aatgcaagccttgaaagcagctcttccaacatcaacagcttcaccagttatgctgcttttatgcatatcatttagaag |
41144469 |
T |
|
| Q |
153 |
ctctt |
157 |
Q |
| |
|
|||| |
|
|
| T |
41144470 |
atctt |
41144474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 31130103 - 31129882
Alignment:
| Q |
5 |
ctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttccaac |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31130103 |
ctttatattcatcagtttcacctgcagagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttcctac |
31130004 |
T |
|
| Q |
105 |
atctactgcttcacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattgctaacatcaagtgttttgttt |
204 |
Q |
| |
|
||| || ||||||| | ||||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| | | |
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|
| T |
31130003 |
atcaacagcttcaccaattaagctgcttttttctatatcacttaaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagtttggcta |
31129904 |
T |
|
| Q |
205 |
gaaaacaaatggtttttgcata |
226 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
31129903 |
gaaaacaattggtttttgcata |
31129882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 31137089 - 31137310
Alignment:
| Q |
5 |
ctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttccaac |
104 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
31137089 |
ctttatattcatcagtttctcctgcagagttaacaaaatccatagaaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaac |
31137188 |
T |
|
| Q |
105 |
atctactgcttcacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattgctaacatcaagtgttttgttt |
204 |
Q |
| |
|
||| || ||||| | | ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||| | |
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|
| T |
31137189 |
atcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagttttgcta |
31137288 |
T |
|
| Q |
205 |
gaaaacaaatggtttttgcata |
226 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31137289 |
gaaaacaaatggtttttgcata |
31137310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 31151950 - 31151729
Alignment:
| Q |
5 |
ctttatactcatcagtttcacctgtggagttaacaaaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagcagctcttccaac |
104 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
31151950 |
ctttatattcatcagtttctcctgcagagttaacaaaatccatagaaaaaaatgcgtttgacaaaaaattcaatgaagttttaaaaacagcttttccaac |
31151851 |
T |
|
| Q |
105 |
atctactgcttcacaagttaagctgcttctatcaatatcacttaaaagctcttgaagcttcttacacctaagttcattgctaacatcaagtgttttgttt |
204 |
Q |
| |
|
||| || ||||| | | ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||| | |
|
|
| T |
31151850 |
atcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaagcttcttacacctaagtgcatggctagcatcaagagttttgcta |
31151751 |
T |
|
| Q |
205 |
gaaaacaaatggtttttgcata |
226 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31151750 |
gaaaacaaatggtttttgcata |
31151729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 29974972 - 29975024
Alignment:
| Q |
40 |
aaatccatagagaaaaaagtgtttgacaaaaaattcaatgaagtcttaaaagc |
92 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
29974972 |
aaatcaatagagaaaatagtgtttgacaacaaattgattgatgtcttaaaagc |
29975024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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