View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_high_2 (Length: 555)
Name: NF19843_high_2
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_high_2 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: scaffold0032 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 44730 - 45268
Alignment:
| Q |
1 |
tattgcttatatgtttcccaactatgataagtttaattaccatgatgcagcatctcccatattcaagcagttggacttctgattttagcagcgtttaaag |
100 |
Q |
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| T |
44730 |
tattgcttatatgtttcccaactatgataagtttaattaccatgatgtagcatctcccatattcaagcagttggacttctgattttagcagcgtttaaag |
44829 |
T |
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| Q |
101 |
aaattcgccatcgatcaggaaaatatatcttgaagtactgccctagtatcagagtcctgtatnnnnnnnnnnnnnnnnnnagctgttggatgaagtatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44830 |
aaattcgccatcgatcaggaaaatatatcttgaagtactgccctagtatcagagtcctgtattcatcatcatcatcatcaagctgttggatgaagtatgg |
44929 |
T |
|
| Q |
201 |
gattgttgtgatgttcatctttatgatgatgttcttaccactggcacactttatggctttaactgataaatgagtatgtgtgggacttctataattgatg |
300 |
Q |
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| T |
44930 |
gattgttgtgatgttcatctttatgatgatgttcttaccactggcacactttatggctttaactgataaatgagtatgtgtgggacttctataattgatg |
45029 |
T |
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| Q |
301 |
gtagcattgatgcagacgattatcatcatttaataacacttttaaattaataannnnnnnggcggaataaatattttaatttgtatgcagagtgtaaaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45030 |
gtagcattgatgcagacgattatcatcatttaataacacttttaaattaataatttttttggcggaataaatattttaatttgtatgcagagtgtaaaac |
45129 |
T |
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| Q |
401 |
tatcttacatctgtaaaatattctgcacataaagtgtaaaactcttttgcacatgaacataaggtttattctatcgtgaattagtgttatagatggtcca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45130 |
tatcttacatctgtaaaatattctgcacataaagtgtaaaactcttttgcacatgaacataaggtttattctatcgcgaattagtgttatagatggtcca |
45229 |
T |
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| Q |
501 |
ctttggatcacatttggttttctttttagaggtttggat |
539 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45230 |
ctttggatcacatttggttttctttttagaggtttggat |
45268 |
T |
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