View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_high_3 (Length: 554)
Name: NF19843_high_3
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Original strand, 45787278 - 45787803
Alignment:
| Q |
18 |
gaaccctacacttcagatcctcttcccctttaaccggacagtgtctttccctataaatcattctactccgcttatacctcaatgatctcgtcggatcctc |
117 |
Q |
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| T |
45787278 |
gaaccctacacttcagatcctcttcccctttaaccggacagtgtctttccctataaatcattctactccgcttatacctcaaagatctagtcggatcctc |
45787377 |
T |
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| Q |
118 |
acatggtgtgtattctgtgaaattcacgccacaacgagggaagttaaaggtttcggatgaaagtgcgatgatggtatcggaggagttatggtgagattgg |
217 |
Q |
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| T |
45787378 |
acatggtgtgtattctgtgaaattcacgccacaacgagggaagttaaaggtttcggatgaaagtgcgatgatggtatcggaggagttatggtgagattgg |
45787477 |
T |
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| Q |
218 |
aaatcgagggtgggcttattgacttg---gatggtgcatgatggtgatgttacgatggcttttttcgtgagggaggtgaaagaagcacgttgttgataag |
314 |
Q |
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| T |
45787478 |
aaatcgagggtgggtttattgacttgttggatggtgcatgatggtgatgttatgatggcttttttcgtgagggaggtgaaagaagcacgttgttgataag |
45787577 |
T |
|
| Q |
315 |
cgcctaggagataaaaggcagcacagaggaaagcgatgaggaagtagaggtgaggttttctcattgatgaaggtctgggaaatttgttgttacgtgaata |
414 |
Q |
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| T |
45787578 |
cgcctaggagataaaaggcagcacagaggaaagcgatgaggaagtagaggtgaggttttctcattgatgaaggtctgggaaatttgttgttacgtgaata |
45787677 |
T |
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| Q |
415 |
agatgatggatccatcgtattcagtagaaactatcaagactgaagaaagtgattcttggaatttagaattggtttaggtttagggcttgatttaa-ttta |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45787678 |
agatgatggatccatcgtattcagtagaaactatcaagactgaagaaagtgattcttggaatttagaattggtttaggtttagggcttgatttaatttta |
45787777 |
T |
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| Q |
514 |
gatgtatatataattttcagtctctg |
539 |
Q |
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| T |
45787778 |
gatgtatatataattttcagtctctg |
45787803 |
T |
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