View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19843_high_4 (Length: 471)

Name: NF19843_high_4
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19843_high_4
NF19843_high_4
[»] chr4 (3 HSPs)
chr4 (198-461)||(14259761-14260024)
chr4 (18-203)||(14260093-14260278)
chr4 (304-453)||(14265298-14265444)
[»] chr2 (3 HSPs)
chr2 (304-434)||(22146052-22146182)
chr2 (50-131)||(22145724-22145805)
chr2 (39-139)||(7558852-7558952)
[»] chr1 (1 HSPs)
chr1 (39-139)||(19723867-19723967)
[»] chr5 (1 HSPs)
chr5 (39-139)||(8771764-8771864)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 198 - 461
Target Start/End: Complemental strand, 14260024 - 14259761
Alignment:
Q  198 ggtagaagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt 297  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14260024 ggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt 14259925  T
Q  298 aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14259924 aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa 14259825  T
Q  398 aatgatcatagagaatacatttgaatcgataactaaaatatatcaaaaacattttcatctcact 461  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  14259824 aatgatcatggagaatacatttgaatcgataactaaaatataccaaaaacattttcatatcact 14259761  T

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Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 14260278 - 14260093
Alignment:
Q  18 gttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  14260278 gttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactctcatatatacccttgtacggtgaaaatgttttgtccatca 14260179  T
Q  118 tcctgaatataaaaaataaattgaatagatttttnnnnnnnntaatatctttttatacattgtttataataaaaataaacggtaga 203  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  14260178 tcctgaatataaaaaataaattgaatagatttttataaaaaataatatctttttatacattgtttataataaaaataaacggtaga 14260093  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 453
Target Start/End: Complemental strand, 14265444 - 14265298
Alignment:
Q  304 ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat 403  Q
    |||| ||||||||||| |||||||||||||||||| ||||||| || ||||||| ||||||||  ||||||||||||| |||||||||| |||||||| |    
T  14265444 ttacatttccataactcgatctttccaagaaaaaccaccacacgtgaattgtcaaaagatcca--tagtataaaatcggtcaagtcatctacaaaatggt 14265347  T
Q  404 catagagaatacatttgaatcgataactaaaatatatcaaaaacattttc 453  Q
    |||  |||||||| |||||||||||||| ||||||| || ||||||||||    
T  14265346 catgaagaatacacttgaatcgataact-aaatataccataaacattttc 14265298  T

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Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 434
Target Start/End: Original strand, 22146052 - 22146182
Alignment:
Q  304 ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat 403  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |      
T  22146052 ttaccttaccataatttgatctttccaaggaaaactaccacacatgcattgtcagaagatcctgatagtataaaatcggtgaagtcatccacaaaacggc 22146151  T
Q  404 catagagaatacatttgaatcgataactaaa 434  Q
    ||| ||||||||| |||||||| || |||||    
T  22146152 catggagaatacacttgaatcggtatctaaa 22146182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 22145724 - 22145805
Alignment:
Q  50 attatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaa 131  Q
    ||||||||||||||| |||||  |||||||||||||| ||||||   |||||||||||||||||| |||| |||||||||||    
T  22145724 attatgaaaccaagtatcttcacgactttcatatatagccttgtaaagtgaaaatgttttgtccaacatcttgaatataaaa 22145805  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 7558952 - 7558852
Alignment:
Q  39 cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat 138  Q
    |||||||||||||||||||||||| | |||||  ||||||||||||||   ||||   |||||||| |||||||||  ||| ||||||||||| ||||||    
T  7558952 cattgatctatattatgaaaccaattatcttcatgactttcatatatagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat 7558853  T
Q  139 t 139  Q
    |    
T  7558852 t 7558852  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 19723967 - 19723867
Alignment:
Q  39 cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat 138  Q
    |||| ||||||||||||||||||| | |||||  ||||||||||||||   ||||   ||||||||||||||||||  ||| ||||||||||| ||||||    
T  19723967 cattaatctatattatgaaaccaattatcttcacgactttcatatatagtattgtaaagtgaaaatgttttgtccaagatcatgaatataaaacataaat 19723868  T
Q  139 t 139  Q
    |    
T  19723867 t 19723867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 8771764 - 8771864
Alignment:
Q  39 cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat 138  Q
    |||||||||||||||||||||||| | |||||  |||||||||||| |   ||||   |||||||| |||||||||  ||| ||||||||||| ||||||    
T  8771764 cattgatctatattatgaaaccaattatcttcatgactttcatataaagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat 8771863  T
Q  139 t 139  Q
    |    
T  8771864 t 8771864  T

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