View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_high_5 (Length: 433)
Name: NF19843_high_5
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 131 - 425
Target Start/End: Original strand, 28808514 - 28808808
Alignment:
| Q |
131 |
cacagccaagaatatagtaatatattgagttaataaaactctcccatgtttgaactattgctcgtcctctagcaattagcttagatagaaaatacttttt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808514 |
cacagccaagaatatagtaatatattgagttaataaaactctcccatgtttgaactattgctcgtcctctagcaattagcttagatagaaaatacttttt |
28808613 |
T |
|
| Q |
231 |
aaacgagcattgcataaagacaaaagaatatagattcaaaagaatagaggttcaacaatcaaggggtcataatcctaaattccaaattagaatcttttga |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28808614 |
aaacgagcattgcataaagacaaaagaatatagattcaaaagaatagaggttcaacaatcaaggggtcataatcctaaattccaaattagaatcttttga |
28808713 |
T |
|
| Q |
331 |
tcctttaagtaacatgtcctcaagagcgtaaggaaaactagtagtattttgtttgaagatgagaccttttccttggttcattgcttcatattctt |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28808714 |
tcctttaagtaacatgtcctcaagagcgtaaggaaaactagtagtattttgtttgaagatgagaccttttccttggttcattgcttcattttctt |
28808808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 3051408 - 3051364
Alignment:
| Q |
278 |
aggttcaacaatcaaggggtcataatcctaaattccaaattagaa |
322 |
Q |
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| T |
3051408 |
aggtttaacaatcaaggggtcatcatccaaaatttcaaattagaa |
3051364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 20065344 - 20065388
Alignment:
| Q |
278 |
aggttcaacaatcaaggggtcataatcctaaattccaaattagaa |
322 |
Q |
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||||| ||||||||||||||||| |||| ||||| |||||||||| |
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| T |
20065344 |
aggtttaacaatcaaggggtcatcatccaaaattacaaattagaa |
20065388 |
T |
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