View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_low_1 (Length: 800)
Name: NF19843_low_1
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 786
Target Start/End: Complemental strand, 16151878 - 16151105
Alignment:
| Q |
19 |
gcaatatatagagggattaattaaaaacgaaagccaatgtatttataagtagcaaaacttattttaaagtaattttttgtctctagaatttcaattttat |
118 |
Q |
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| T |
16151878 |
gcaatatatagagggattaattaaaaacgaaagccaatgtatttataagtagcaaaacttattttaaagtaattttttgtctctataatttcaattttat |
16151779 |
T |
|
| Q |
119 |
tcccttatgcaccgtcatgtgtgcatccttaaacaacgattgtcaaattttaagaccaaaaatatttgagtgagcattgtttgaagaaattttttgacag |
218 |
Q |
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| T |
16151778 |
tcccttatgcaccgtcatgtgtgaaaccttaaacaacgattgtcaatttttaagacgaaaaatatttgagggagcattgtttgaagaaattttttgac-g |
16151680 |
T |
|
| Q |
219 |
actaaaaacaaaaagtgatatatttataaaaacggaggacttatttaaaccgtaataaaattcatatctattgagttctacaggtttcaacggataaggt |
318 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16151679 |
actaaaaacaaaat---atatatttataaaaacgggggacttatttaaaccataataaaattcatatctattgagttctacaggtttcaacggataaggt |
16151583 |
T |
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| Q |
319 |
tccgtgttgtcgctggttcagcattttcattcctagattctctgataattgttcaagtatgttaaaatctacaggttttagggttttgggagtttgtgaa |
418 |
Q |
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| T |
16151582 |
tccgtgttgtcgctgctttagcattttcattcctagattctctgataattgttcaagtctgttaaaatctacaggttttagggttttgggagtttgagaa |
16151483 |
T |
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| Q |
419 |
aaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtgaagtgatctataaatatctttgtta |
518 |
Q |
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| T |
16151482 |
aaataaactacaacaatgtttgcattcatctaa--tatagtgtcaaattttgtgatgttgtggttgccgttgttgaaataatctacaaatatctttgcta |
16151385 |
T |
|
| Q |
519 |
cttagtcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaaagattctccgacttccgtgga-----------g |
607 |
Q |
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| T |
16151384 |
cttagtcaaaatcaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaaagattctccgacttccgtggagcaaatatgttg |
16151285 |
T |
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| Q |
608 |
tgaccaaagtgtcatagcaaaaccc---tatagttcagcgtgacggagaatgagacgtcaatgttgcacattaggcaccctgttactggtggatgccaac |
704 |
Q |
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| T |
16151284 |
tgaccaaagtgtcatagc--aacccttgtatagttcagcgtgacggagaatgagacatcaatgttgcacattaggcgccctgttactggtgaatgccaac |
16151187 |
T |
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| Q |
705 |
gagacaactgatgttagttgtctcgtgtcagtttctagagtaggccgatcttgttgttgttttgttcacttagcatcctttg |
786 |
Q |
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| T |
16151186 |
gagacaaccgatgttagttgtctcctgtcagtttctagagtaggccgatctcgttgttgttgtgttcacttagcatgctttg |
16151105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 408 - 497
Target Start/End: Complemental strand, 13696944 - 13696857
Alignment:
| Q |
408 |
gagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtgaagt |
497 |
Q |
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| T |
13696944 |
gagtttgtgaaaaataaattacaacaacgtttgcattcatgta--atatagtgccaaattttgtgatattgtcgttgccgttgttgaagt |
13696857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 408 - 447
Target Start/End: Original strand, 951987 - 952026
Alignment:
| Q |
408 |
gagtttgtgaaaaataaactacaacaatgtttgcattcat |
447 |
Q |
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| T |
951987 |
gagtttgtgaaaaataagctacaacaatgtttgcattcat |
952026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 524 - 585
Target Start/End: Original strand, 31653261 - 31653322
Alignment:
| Q |
524 |
tcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaa |
585 |
Q |
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||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
31653261 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaa |
31653322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 7527879 - 7527917
Alignment:
| Q |
417 |
aaaaataaactacaacaatgtttgcattcatctaatata |
455 |
Q |
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| T |
7527879 |
aaaaataaaatacaacagtgtttgcattcatctaatata |
7527917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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