View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19843_low_11 (Length: 301)

Name: NF19843_low_11
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19843_low_11
NF19843_low_11
[»] chr7 (4 HSPs)
chr7 (9-285)||(9905631-9905924)
chr7 (127-187)||(9905208-9905268)
chr7 (142-188)||(48737256-48737302)
chr7 (142-187)||(48737958-48738003)
[»] scaffold0417 (2 HSPs)
scaffold0417 (33-188)||(9222-9378)
scaffold0417 (77-161)||(8896-8980)
[»] chr3 (1 HSPs)
chr3 (77-189)||(35274439-35274551)
[»] chr2 (2 HSPs)
chr2 (79-185)||(17737496-17737602)
chr2 (77-189)||(17736976-17737088)
[»] chr8 (3 HSPs)
chr8 (141-186)||(33076220-33076265)
chr8 (113-159)||(7656071-7656117)
chr8 (141-185)||(9135044-9135088)
[»] chr5 (1 HSPs)
chr5 (90-187)||(43450122-43450219)
[»] chr4 (2 HSPs)
chr4 (78-187)||(32160311-32160420)
chr4 (79-187)||(32160987-32161095)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 9905631 - 9905924
Alignment:
Q  9 gaagaatatgggagtgtgagaaggagaagaagaaactaattttgtttttgaataaaatacatgttctgtattttaattaaataaatctcaacctttatat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9905631 gaagaagatgggagtgtgagaaggagaagaagaaactaattttgtttttgaataaaatacatgttctgtattttaattaaataaatctcaacctttatat 9905730  T
Q  109 ttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgtacctgaactccactcttg------------- 195  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||                 
T  9905731 ttaattttgtcatgtgtcttcgatccaaagcttaaatggactaaatgaagcattacctaaatggagcgtacttgaactccactcttgtatattatttact 9905830  T
Q  196 ----tacattannnnnnnnnctgtaaggtaaagggagctccacaatccattggcgcaaaacagcattttcactttctctcaaatatctgcaagt 285  Q
        |||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9905831 cttgtacattattttcttttctgtaaggtaaagggagctccacaatccattggcgcaaaacagcattttcactttctctcaaatatctgcaagt 9905924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 9905268 - 9905208
Alignment:
Q  127 ttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgtacctgaactc 187  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||    
T  9905268 ttccatccaaagtttaaatggactaaattgagcattacctaaatggagcatacctgaactc 9905208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 48737302 - 48737256
Alignment:
Q  142 aaatgaactaaatgaagcattacctaaatggagcgtacctgaactcc 188  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||||    
T  48737302 aaatggactaaatggagcattacctaaatggagcatacctaaactcc 48737256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 48737958 - 48738003
Alignment:
Q  142 aaatgaactaaatgaagcattacctaaatggagcgtacctgaactc 187  Q
    ||||| |||||||| ||||||||||||||||||| ||||| |||||    
T  48737958 aaatggactaaatggagcattacctaaatggagcatacctaaactc 48738003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 9222 - 9378
Alignment:
Q  33 agaagaagaaactaattttgttt-ttgaataaaatacatgttctgtattttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttcca 131  Q
    ||||||||||||||||||  ||| || ||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||||| ||  |||||||||    
T  9222 agaagaagaaactaatttattttattaaataaaatacatgttctttattttaattaaataaatctcaacccttgaatttaattttgccacatgtcttcca 9321  T
Q  132 tccaaagtttaaatgaactaaatgaagcattacctaaatggagcgtacctgaactcc 188  Q
    ||| ||| ||||||| | |||||| ||||  ||||||||||||| ||||||||||||    
T  9322 tccgaagcttaaatggattaaatggagcaaaacctaaatggagcatacctgaactcc 9378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 8980 - 8896
Alignment:
Q  77 tattttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcat 161  Q
    ||||||||||||||||||||||||| ||  ||||||||||| ||  |||||||||||  ||| ||||||| | |||||| |||||    
T  8980 tattttaattaaataaatctcaacccttgaatttaattttgccacatgtcttccatctgaagcttaaatggattaaatggagcat 8896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 35274551 - 35274439
Alignment:
Q  77 tattttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcg 176  Q
    ||||||||||||||||||||||||| ||  |||||||| || ||  |||||||||||||||||||||||| |||||||| | |||||||||||||||||     
T  35274551 tattttaattaaataaatctcaacccttgaatttaattatgccacatgtcttccatccaaagtttaaatggactaaatggaacattacctaaatggagca 35274452  T
Q  177 tacctgaactcca 189  Q
    |||||||| ||||    
T  35274451 tacctgaattcca 35274439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 17737496 - 17737602
Alignment:
Q  79 ttttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgta 178  Q
    |||| |||||||||||||||||||||| |||||||||||  |  |||||| ||| ||||   |||||| | |||||| ||||||||||||||||||| ||    
T  17737496 tttttattaaataaatctcaacctttaaatttaattttgctacatgtctttcattcaaaacctaaatggattaaatggagcattacctaaatggagcata 17737595  T
Q  179 cctgaac 185  Q
    |||||||    
T  17737596 cctgaac 17737602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 17737088 - 17736976
Alignment:
Q  77 tattttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcg 176  Q
    |||||| |||||||||||||||||| ||| ||| ||||||| ||  |||||| |||| |||  | ||||| |||||||  |  ||||||||||||||||     
T  17737088 tatttttattaaataaatctcaacccttaaattgaattttgccacatgtctttcatctaaaactaaaatggactaaatagaatattacctaaatggagca 17736989  T
Q  177 tacctgaactcca 189  Q
    |||||||||||||    
T  17736988 tacctgaactcca 17736976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 33076220 - 33076265
Alignment:
Q  141 taaatgaactaaatgaagcattacctaaatggagcgtacctgaact 186  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  33076220 taaatgaactaaatgaagcattgcctaaatggagcatacctgaact 33076265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 7656117 - 7656071
Alignment:
Q  113 ttttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagc 159  Q
    |||||||||||| ||| |||||||||  |||||||||||||||||||    
T  7656117 ttttgtcatgtggcttacatccaaagactaaatgaactaaatgaagc 7656071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 9135044 - 9135088
Alignment:
Q  141 taaatgaactaaatgaagcattacctaaatggagcgtacctgaac 185  Q
    |||||| |||||||  ||||||| |||||||||||||||||||||    
T  9135044 taaatggactaaattgagcattagctaaatggagcgtacctgaac 9135088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 43450122 - 43450219
Alignment:
Q  90 taaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgtacctgaactc 187  Q
    ||||||||| |||||| | || |||||| ||  |||| |||||||||| | |||||| |||||||| |||||||  |||||||||| |||||||||||    
T  43450122 taaatctcagcctttaaactttattttgccacatgtcctccatccaaaatataaatggactaaatggagcattaggtaaatggagcatacctgaactc 43450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 32160420 - 32160311
Alignment:
Q  78 attttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgt 177  Q
    ||||| |||||||||||||||||| ||| | ||||| ||| ||  |||||| |||| ||||  |||||| ||||||||  ||  ||| |||||| ||| |    
T  32160420 atttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggggctatacataaatgaagcat 32160321  T
Q  178 acctgaactc 187  Q
    ||||||||||    
T  32160320 acctgaactc 32160311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 32160987 - 32161095
Alignment:
Q  79 ttttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttccatccaaagtttaaatgaactaaatgaagcattacctaaatggagcgta 178  Q
    |||| |||||||||||||||||| ||| | ||||| ||| ||  ||||||| ||| |||  ||||||| |||||||  |||  ||| |||||||||| ||    
T  32160987 tttttattaaataaatctcaacccttaaaattaatcttgccacatgtcttctatctaaaacttaaatggactaaatagagctatacataaatggagcata 32161086  T
Q  179 cctgaactc 187  Q
    ||| |||||    
T  32161087 cctaaactc 32161095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University