View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_low_12 (Length: 278)
Name: NF19843_low_12
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5256 - 5516
Alignment:
| Q |
1 |
aagacgaattcttatcaaatacaccagacatttgaatcgatgatgtacctgtagcaataatttggagctgactaaatagtaactatctgggtattaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
5256 |
aagacgaattcttatcaaatacaccagacatttgaatcgatgatgtacctgtagcaataatttggagctgactaaatagtaactatctggttattgaaca |
5355 |
T |
|
| Q |
101 |
tccatttagatccttccattaccaactaatatatgagatcgacatatatagtcaaactatttttgcaatgccttttttccgcactcccattgcctacaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5356 |
tccatttagatccttccattaccaactaatatatgagatcgacatatatagtcaaactatttttgcaatgccttttttccgcactcccattacctacaag |
5455 |
T |
|
| Q |
201 |
aagttttatttatcactatccttggggtgtcaagtaactctacaaaatttgaaattaagac |
261 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
5456 |
aagttttatttatcactatccttggggcgtcaagtaactctacaaaatctgaaattaagac |
5516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 41055790 - 41055892
Alignment:
| Q |
25 |
cagacatttgaatcgatgatgtacctgtagcaataatttggagctgactaaatagtaactatctgggtattaaacatccatttagatccttccattacca |
124 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||| | | ||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
41055790 |
cagacatttgaattgactatgtacctgtagcaataatttggagctgaccagacagtaactatctggttattgaacatccatttatatccttccattacca |
41055889 |
T |
|
| Q |
125 |
act |
127 |
Q |
| |
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||| |
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| T |
41055890 |
act |
41055892 |
T |
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