View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_low_14 (Length: 256)
Name: NF19843_low_14
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 2916928 - 2917174
Alignment:
| Q |
1 |
aatgaaatgtgcagagtaagggatgaaaaatttgttcaccttttaatgatactttcagtaaggccatatggaatttgttcaaccatccttcaaaaagagc |
100 |
Q |
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| T |
2916928 |
aatgaaatgtgcagagtaagggatgaaaaatttgttcaccttttaatgatactttcagtaaggccatatggaatttgttcaaccatccttcaaaaagagc |
2917027 |
T |
|
| Q |
101 |
agactgatcaataggaagattgaaaagttgaagagtttgagagtgagaaagaaagaatgtaggaaaataattggtgtccaatgtacatacatagggaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917028 |
agactgatcaataggaagattgaaaagttgaagagtttgagagtgagaaagaaagaatgtaggaaaataattggtgtccaatgtacatacatagggaagg |
2917127 |
T |
|
| Q |
201 |
gacaaaaatggaattataaggtg-aaagtagtcaagtctgtgctgct |
246 |
Q |
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| T |
2917128 |
gacaaaaatggaattataaggtgaaaagtagtcaagtttgtgctgct |
2917174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 2912003 - 2912113
Alignment:
| Q |
29 |
aatttgttcaccttttaatgatactttcagtaaggccatatggaatttgttcaaccatccttcaaaaagagcagactgatcaataggaagattgaaaagt |
128 |
Q |
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||||||||||||||||||||| ||||||| ||| |||||||||||| | ||| |||||||| ||||||| |||| ||||||| | |||||||||||||| |
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| T |
2912003 |
aatttgttcaccttttaatgaggctttcagcaagaccatatggaattagctcagccatcctttaaaaagatcagattgatcaaga-gaagattgaaaagt |
2912101 |
T |
|
| Q |
129 |
tgaagagtttga |
140 |
Q |
| |
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|| ||||||||| |
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| T |
2912102 |
tgtagagtttga |
2912113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 13790664 - 13790626
Alignment:
| Q |
65 |
catatggaatttgttcaaccatccttcaaaaagagcaga |
103 |
Q |
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| T |
13790664 |
catatggaatttgctcagccatccttcaaaaagagcaga |
13790626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 2978949 - 2978917
Alignment:
| Q |
67 |
tatggaatttgttcaaccatccttcaaaaagag |
99 |
Q |
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| T |
2978949 |
tatggaatttgttcagccatccttcaaaaagag |
2978917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 2988740 - 2988708
Alignment:
| Q |
67 |
tatggaatttgttcaaccatccttcaaaaagag |
99 |
Q |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
2988740 |
tatggaatttgttcagccatccttcaaaaagag |
2988708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 18355137 - 18355105
Alignment:
| Q |
67 |
tatggaatttgttcaaccatccttcaaaaagag |
99 |
Q |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
18355137 |
tatggaatttgttcagccatccttcaaaaagag |
18355105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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