View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19843_low_15 (Length: 236)

Name: NF19843_low_15
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19843_low_15
NF19843_low_15
[»] chr8 (10 HSPs)
chr8 (16-236)||(2916475-2916695)
chr8 (22-167)||(3142516-3142664)
chr8 (32-167)||(2711646-2711781)
chr8 (32-146)||(2911491-2911605)
chr8 (32-170)||(9851460-9851601)
chr8 (32-159)||(2988966-2989093)
chr8 (31-150)||(13790921-13791040)
chr8 (121-167)||(3001974-3002020)
chr8 (31-105)||(3282857-3282931)
chr8 (102-159)||(2980054-2980111)
[»] scaffold0065 (2 HSPs)
scaffold0065 (20-167)||(45071-45221)
scaffold0065 (32-167)||(50240-50378)
[»] chr7 (1 HSPs)
chr7 (36-163)||(3919516-3919646)
[»] chr6 (1 HSPs)
chr6 (32-172)||(18355350-18355490)
[»] chr1 (1 HSPs)
chr1 (32-172)||(10756020-10756160)
[»] chr4 (1 HSPs)
chr4 (42-172)||(8572660-8572790)
[»] chr3 (1 HSPs)
chr3 (42-172)||(28698620-28698750)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 2916475 - 2916695
Alignment:
Q  16 attctgtgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916475 attctgtgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggt 2916574  T
Q  116 tttgttcttgtttctcctcagcatcaaggagcacagctttgatggattcaaccgtctcccgaagcctatcgacctcatacttaacaccatatatccgtcg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916575 tttgttcttgtttctcctcagcatcaaggagcacagctttgatggattcaaccgtctcccgaagcctatcgacctcatacttaacaccatatatccgtcg 2916674  T
Q  216 aaattcacgacaggcctcaga 236  Q
    |||||||||||||||||||||    
T  2916675 aaattcacgacaggcctcaga 2916695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 3142516 - 3142664
Alignment:
Q  22 tgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcat---tgagtcttctaatccagttttgtacagcatggtttt 118  Q
    |||| |||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||   |||||||||| |||||| |||||||||||||  |||    
T  3142516 tgtctcatgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcatgacttt 3142615  T
Q  119 gttcttgtttctcctcagcatcaaggagcacagctttgatggattcaac 167  Q
      |||||||| || |||||||||||||||||||||||||||||||||||    
T  3142616 tctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaac 3142664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 2711646 - 2711781
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 131  Q
    ||||||||| ||| ||||||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||  |||| |||||||| ||    
T  2711646 cttcaataagaaactcatctatcaaatcatcagcaggaagaagcacatctttgagccttctaacccagttttgtacagcatgactttgctcttgtttgtc 2711745  T
Q  132 ctcagcatcaaggagcacagctttgatggattcaac 167  Q
     |||||||||||||| ||||||||||||||||||||    
T  2711746 ttcagcatcaaggaggacagctttgatggattcaac 2711781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 2911491 - 2911605
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 131  Q
    |||||||||||||||||||||||||||  ||||||  ||  |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  2911491 cttcaataacaaattcatctagcaagttgtcagcaaaattcagcacatctttgagtcttctaatccagttttttacagcatggttttgttcttgtttgtc 2911590  T
Q  132 ctcagcatcaaggag 146  Q
    |||||||||||||||    
T  2911591 ctcagcatcaaggag 2911605  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 9851460 - 9851601
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttg---ttcttgttt 128  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| | ||| ||| | |||||||| |||||   |||||||||    
T  9851460 cttcaataacaaattcatctagcaaatcatctgcaggatgaagcacatctttgagccttcttacccaatttcgaacagcatgattttgtgcttcttgttt 9851559  T
Q  129 ctcctcagcatcaaggagcacagctttgatggattcaaccgt 170  Q
    ||| |||||||||||||||||| || | || |||||||||||    
T  9851560 ctcttcagcatcaaggagcacaactctaatagattcaaccgt 9851601  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 2989093 - 2988966
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 131  Q
    ||||||||| ||| ||||||| ||| ||||| |||||| ||||||| || ||||| ||||| | ||||  |||||||||| |  |||  |||||||||||    
T  2989093 cttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgtctttgagccttcttacccagacttgtacagcaggacttttctcttgtttctc 2988994  T
Q  132 ctcagcatcaaggagcacagctttgatg 159  Q
    ||||||||||||||| |||||| |||||    
T  2988993 ctcagcatcaaggagtacagctctgatg 2988966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 13791040 - 13790921
Alignment:
Q  31 ccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttct 130  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||||  |||| ||||| ||||| || |||||| ||   |||||||| ||||| |    
T  13791040 ccttcaataataaattcatctagcaagtcatctgcaagatgaagcacatctgtgagccttcttatccaattctgtacaacaaaattttgttcctgtttat 13790941  T
Q  131 cctcagcatcaaggagcaca 150  Q
    |||  || ||||||||||||    
T  13790940 cctgggcgtcaaggagcaca 13790921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 3002020 - 3001974
Alignment:
Q  121 tcttgtttctcctcagcatcaaggagcacagctttgatggattcaac 167  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  3002020 tcttgtttgtcttcagcatcaaggagcacagctttgatggattcaac 3001974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 3282857 - 3282931
Alignment:
Q  31 ccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgt 105  Q
    ||||||||||  |||||||||||||||||||| ||| ||||||||||||| ||||| ||||  ||||| ||||||    
T  3282857 ccttcaataatgaattcatctagcaagtcatctgcaagatgaagcacatctttgagccttcctatccaattttgt 3282931  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 2980111 - 2980054
Alignment:
Q  102 ttgtacagcatggttttgttcttgtttctcctcagcatcaaggagcacagctttgatg 159  Q
    ||||||||||||  |||  |||||||||||||||||||||||||| |||||| |||||    
T  2980111 ttgtacagcatgacttttctcttgtttctcctcagcatcaaggagtacagctctgatg 2980054  T

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Target: scaffold0065 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 45221 - 45071
Alignment:
Q  20 tgtgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcat---tgagtcttctaatccagttttgtacagcatggtt 116  Q
    |||||| |||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||   |||||||||| ||||||||||| ||| ||||  |    
T  45221 tgtgtctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagcacatcatctttgagtcttcttatccagttttgcacaccatgact 45122  T
Q  117 ttgttcttgtttctcctcagcatcaaggagcacagctttgatggattcaac 167  Q
    ||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  45121 ttgttgttgtttctcctcagcatcaaggagcacagctctgacggattcaac 45071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 50378 - 50240
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcat---tgagtcttctaatccagttttgtacagcatggttttgttcttgttt 128  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| |||||||   |||||||||| |||||| ||||||||||||   |||| ||||||||    
T  50378 cttcaataagaaatttatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcattactttgctcttgttt 50279  T
Q  129 ctcctcagcatcaaggagcacagctttgatggattcaac 167  Q
    ||| |||||||| ||||||||||||  || |||||||||    
T  50278 ctcttcagcatcgaggagcacagctcagacggattcaac 50240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 3919516 - 3919646
Alignment:
Q  36 aataacaaattcatctagcaagtcatcagcaggatgaagcacatcat---tgagtcttctaatccagttttgtacagcatggttttgttcttgtttctcc 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||   |||| ||||| ||||||||||| ||| |||| ||||||| ||||||||||    
T  3919516 aataacaaattcatcgagcaagtcatcagcaggatgaagcacatcatctttgagccttcttatccagttttgcacaccatgattttgttgttgtttctcc 3919615  T
Q  133 tcagcatcaaggagcacagctttgatggatt 163  Q
    || |||||||||||||||||| |||||||||    
T  3919616 tcggcatcaaggagcacagctctgatggatt 3919646  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 18355490 - 18355350
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 131  Q
    ||||||||| ||||||||||| ||| ||||| |||||| ||||||  || ||||| ||||||| ||||  ||||||||||||  |||| |||||||| ||    
T  18355490 cttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggtcgttgagccttctaacccagagttgtacagcatgactttgctcttgtttgtc 18355391  T
Q  132 ctcagcatcaaggagcacagctttgatggattcaaccgtct 172  Q
     ||||||||||||||||||||||||||||||||||| ||||    
T  18355390 ttcagcatcaaggagcacagctttgatggattcaactgtct 18355350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 10756020 - 10756160
Alignment:
Q  32 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 131  Q
    ||||||||| ||||||||||| ||| ||||| |||| |  ||||||||| ||||| ||| ||| |||||||||||||  | |  |||  |||||||| |     
T  10756020 cttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgtt 10756119  T
Q  132 ctcagcatcaaggagcacagctttgatggattcaaccgtct 172  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  10756120 ctcagcatcaaggagcacagctctgatggattcaactgtct 10756160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 8572790 - 8572660
Alignment:
Q  42 aaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctcctcagcatca 141  Q
    ||||||||||| ||| ||||| |||| |  ||||||||| ||||| ||| ||| |||||||||||||  | |  |||  |||||||| | ||||||||||    
T  8572790 aaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatca 8572691  T
Q  142 aggagcacagctttgatggattcaaccgtct 172  Q
    |||||| ||||| ||||||||||||| ||||    
T  8572690 aggagcgcagctctgatggattcaactgtct 8572660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 28698750 - 28698620
Alignment:
Q  42 aaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctcctcagcatca 141  Q
    ||||||||||| ||| ||||| |||| |  ||||||||| ||||| ||| ||| |||||||||||||  | |  |||  |||||||| | ||||||||||    
T  28698750 aaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcatca 28698651  T
Q  142 aggagcacagctttgatggattcaaccgtct 172  Q
    |||||| ||||| ||||||||||||| ||||    
T  28698650 aggagcgcagctctgatggattcaactgtct 28698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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