View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_low_18 (Length: 202)
Name: NF19843_low_18
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_18 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 5950165 - 5950002
Alignment:
| Q |
13 |
atgaacaaagttaatcaatcaatttaactcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatcagattcgattcctgattgaaacaa |
112 |
Q |
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| T |
5950165 |
atgaacaaagttaatcaatcaatttgactcaagtggttaatgagattcatcaaatgaagaatcgttcagaagaaccagattcgattcctgattgaaacaa |
5950066 |
T |
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| Q |
113 |
ttcttagctaagttatacataccctatgttagaacttcagattaccaagttctttttctctaga |
176 |
Q |
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| T |
5950065 |
ttcttagctaagttatacataccctatgttagaacttcggattaccaagttctttttctctaga |
5950002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 4299381 - 4299462
Alignment:
| Q |
40 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatcaga-ttcgattcctgattgaaacaattcttagc |
120 |
Q |
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| T |
4299381 |
ctcaagtggttaatgagcttcaccaaaggacgaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagc |
4299462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 4738503 - 4738458
Alignment:
| Q |
41 |
tcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
86 |
Q |
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| T |
4738503 |
tcaagtgattaatgagatcaatcaaatgacgaattgttcaggagaa |
4738458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 14949698 - 14949653
Alignment:
| Q |
41 |
tcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
86 |
Q |
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| T |
14949698 |
tcaagtggttaatgagctctatcaaaagacgaatcgttcaggagaa |
14949653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 25296909 - 25296863
Alignment:
| Q |
40 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
86 |
Q |
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||||||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
25296909 |
ctcaagtggttaatgagctccaccaaaggacgaatcgttcaggagaa |
25296863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2344245 - 2344294
Alignment:
| Q |
39 |
actcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatc |
88 |
Q |
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| T |
2344245 |
actcaagtggttaatgagtttcatcaaatgacaaattttttaggagaatc |
2344294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 41079968 - 41079927
Alignment:
| Q |
39 |
actcaagtggttaatgagattcatcaaatgacgaatcgttca |
80 |
Q |
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| T |
41079968 |
actcaagtggttaatgagctccatcaaaagacgaatcgttca |
41079927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 38919 - 38967
Alignment:
| Q |
40 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatc |
88 |
Q |
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| T |
38919 |
ctcaagtgattaatgaaatccatcaaatgacgaatcgtttaagagaatc |
38967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 34425804 - 34425764
Alignment:
| Q |
38 |
aactcaagtggttaatgagattcatcaaatgacgaatcgtt |
78 |
Q |
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| T |
34425804 |
aactcaagtggttaataagattcatcatatgactaatcgtt |
34425764 |
T |
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