View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19843_low_6 (Length: 432)
Name: NF19843_low_6
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_6 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 7749641 - 7750060
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7749641 |
gacaagatcgttcatgatgaagtagtatttaccagcccataaaggcatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
7749740 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
7749741 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaacccacgcttctcaaactcatagccct |
7749840 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgttgtccccgtctgataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7749841 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctcagtatggggttaatgttgtccccgtctgataa |
7749940 |
T |
|
| Q |
301 |
atgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccccca |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7749941 |
acgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccccaatgtttctagagctaaaggcaacccccca |
7750040 |
T |
|
| Q |
401 |
cacttttctactatattctt |
420 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
7750041 |
cacttttctactattttctt |
7750060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 6591743 - 6591324
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6591743 |
gacaagatcatgcatgatgaagtagtgcttgccagcccataatggcatagttactgattgttggaaaaacgatattgacactagatgattgaagaattca |
6591644 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
|| ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
6591643 |
ttgcccaacttttcttcacttttgtgtctttcccaacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagccct |
6591544 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgttgtccccgtctgataa |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
6591543 |
tgggaaatatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctcagtacggggttaatgctgtcaccatctgataa |
6591444 |
T |
|
| Q |
301 |
atgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccccca |
400 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||| || ||||||| |||||||| | ||||| || ||||| |||||||||||| | ||||||| |
|
|
| T |
6591443 |
atgccacatatcagtctccaatatcttcatccattcggttacagagaattttttttgcaaaagttgccccattgtttttagagctaaaggaatcccccca |
6591344 |
T |
|
| Q |
401 |
cacttttctactatattctt |
420 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
6591343 |
cacttttctactattttctt |
6591324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 2 - 414
Target Start/End: Original strand, 6899728 - 6900143
Alignment:
| Q |
2 |
acaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattcat |
101 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| |||| || |||||| |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
6899728 |
acaagatcatgcatgatgaagtagtatttaccagcccataatggcataattgttgattgctggaaaaatgttattgacactagatcgttgaagaattcat |
6899827 |
T |
|
| Q |
102 |
tacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccctt |
201 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
6899828 |
tacccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgattacttcacccttctcaaactcatagccctt |
6899927 |
T |
|
| Q |
202 |
tggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgttg---tccccgtctgat |
298 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||| || |||||||||||| | || |||| | |
|
|
| T |
6899928 |
tggaaataaagaacaataatcaaaacaatgcttcagattggaagggaggttaaggtaactcaatttcaataaagggttaatgttgttattaccctctggt |
6900027 |
T |
|
| Q |
299 |
aaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaaccccc |
398 |
Q |
| |
|
||| |||| | |||||||||||| || |||| ||| |||| |||| |||| || ||| ||| | | || |||||||| ||||||||||||||||| |
|
|
| T |
6900028 |
aaacgccagaaatcagtctccaacatcttaacccaatcaggttcagagaactttctttccaagagattccccaatgttttcagagctaaaggcaaccctt |
6900127 |
T |
|
| Q |
399 |
cacacttttctactat |
414 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
6900128 |
cacacttttgtactat |
6900143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6882143 - 6882565
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | ||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||| | || ||||||||||||| |
|
|
| T |
6882143 |
gacaagatcatgcatgacgaagtagtatttgtcagcccataatggcataattactgattgttggaaaaaagatattgacaccaaatgattgaagaattca |
6882242 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
||||| |||| || ||| ||||||||||| |||||| | ||| ||||||||||||||||| || |||| |||| ||||| || ||||||||||| |
|
|
| T |
6882243 |
ttacctaactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagccct |
6882342 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgt---tgtccccgtctga |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| | || || || | |
|
|
| T |
6882343 |
tgggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctcagtaacaagttaatgtagatttcaccctcggg |
6882442 |
T |
|
| Q |
298 |
taaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccc |
397 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||| |||| ||||||| ||| |||| | | || |||||||| || ||||||||||||||| |
|
|
| T |
6882443 |
taaacgccacaaatcagtctccaataccttaatccattcagattcagagaatttttttagcaagagattccccaatgttttcagtgctaaaggcaacccc |
6882542 |
T |
|
| Q |
398 |
ccacacttttctactatattctt |
420 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
6882543 |
ccacacttttctactattttctt |
6882565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 6916740 - 6917011
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | ||||| ||||||| ||||| |||||| || |||| |||||||| |||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
6916740 |
gacaagatcatgcatgacaaagtagtgcttacctgcccatcgtggcataattactgatcgttggaaaaatgatattgacactagatcattgaaaaattca |
6916839 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
6916840 |
ttacccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagccct |
6916939 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagta |
272 |
Q |
| |
|
| |||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
6916940 |
tgggaaatatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaactcattctcagta |
6917011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 6168532 - 6168788
Alignment:
| Q |
3 |
caagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattcatt |
102 |
Q |
| |
|
||||||| | ||||||||| ||||| |||||||||||||||| |||| || |||||||||||||||| || ||||||||||||| || ||||||||||| |
|
|
| T |
6168532 |
caagatcatgcatgatgaaatagtacttaccagcccataatggcataattgctgattgttggaaaaatgacattgacactagatgatcaaagaattcatt |
6168631 |
T |
|
| Q |
103 |
acccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagcccttt |
202 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| |||||||||||||| |||| ||||||||||||||||||||| || ||| | ||||| ||| ||||| |
|
|
| T |
6168632 |
acccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaacttataacccttg |
6168731 |
T |
|
| Q |
203 |
ggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaa |
259 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
6168732 |
ggaaatatagaacaatatgcaaaacaatgcttcagatttgaagggaggttaaggtaa |
6168788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 6244932 - 6245342
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | ||||||||| | ||| ||||||||||| |||| |||| || ||||||||||||||||||| ||||||||||||| ||||||||||| | |
|
|
| T |
6244932 |
gacaagatcatgcatgatgaaattgtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgacactagatcattgaagaattta |
6245031 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||| |||| ||| ||||||||||||||||| |||||||| || ||| | ||||||||| |||| |
|
|
| T |
6245032 |
ttacccaactcttcttcatctttggctattccc------tttatcaaaccttctgccatccaaagtttgattaatccatccttttcaaactcataaccct |
6245125 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgt---tgtccccgtctga |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||| || |||| | ||||| |||| | || | |
|
|
| T |
6245126 |
tgggaaatatagaacaataagcaaaacaatgcttcagattggaagggaggttaaggtaactcattcttagaacggaataaatgttgctgtcactctcagg |
6245225 |
T |
|
| Q |
298 |
taaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccc |
397 |
Q |
| |
|
|||| |||||| ||||||||| ||||| |||| ||||||| ||||| ||||| | ||||||| | || |||||||| |||||||||||| ||||| |
|
|
| T |
6245226 |
taaacgccacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgttttcagagctaaaggcgacccc |
6245325 |
T |
|
| Q |
398 |
ccacacttttctactat |
414 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
6245326 |
ccacatttttctactat |
6245342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 63 - 324
Target Start/End: Complemental strand, 6722422 - 6722158
Alignment:
| Q |
63 |
ggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatcca |
162 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||||| || |||| ||||||||||||| |||||||| | ||| |||||| |||||| |
|
|
| T |
6722422 |
ggaaaaatgatattgacactagatgatcaaagaattcattacccaactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatcca |
6722323 |
T |
|
| Q |
163 |
aagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattc |
262 |
Q |
| |
|
|||||| |||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| | || || |
|
|
| T |
6722322 |
aagcttaattagttcactcttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactc |
6722223 |
T |
|
| Q |
263 |
aatctcagtacggggttaatgttg---tccccgtctgataaatgccacatatcagtctccaatat |
324 |
Q |
| |
|
||||| |||||||||||||||||| || || ||||||||| ||||| ||||||||||||||| |
|
|
| T |
6722222 |
aatcttagtacggggttaatgttgttctcaccctctgataaacaccacaaatcagtctccaatat |
6722158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6141925 - 6142347
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | ||| |||||||||| ||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6141925 |
gacaagatcatgcatagtgaagtagtacttaccagaccataatggcataattactgattgttggaaaaatgatattgacactagataatcgaagaattca |
6142024 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
||||| |||| |||| | |||| || || || | || |||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
6142025 |
ttacctaactcttctatgctactgtcaactctgaaatggttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagccct |
6142124 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgtt---gtccccgtctga |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| | | |||||| |||| |||||||| ||| || |||| |
|
|
| T |
6142125 |
tgggaaatatagaacaataagcaaaacaatgcttcagatcagaagggaggctaaggtaactgattctcagaacggaattaatgtttccgtcaccctctgg |
6142224 |
T |
|
| Q |
298 |
taaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccc |
397 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||| ||||||| ||||| ||||||| | | ||| | || |||||||| |||||||| ||||||||| |
|
|
| T |
6142225 |
taaacgccacaaatcagtctccaatatcctaacccattcaatttcagagaattttctattcaagagaatccccaatgttttcagagctaatggcaacccc |
6142324 |
T |
|
| Q |
398 |
ccacacttttctactatattctt |
420 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
6142325 |
ccacacttttctactattttctt |
6142347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 13270943 - 13270530
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | ||||||||| ||||| ||||||||||| |||| || | || ||||||||||||||||||| ||||||||||||| ||||||||||| | |
|
|
| T |
13270943 |
gacaagatcatgcatgatgaaatagtacttaccagcccagaatggcacaattgctgattgttggaaaaacgaaattgacactagatcattgaagaattta |
13270844 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
|||||||||| ||||||| ||||| || |||| ||||||||| |||| ||||||||||||||||||||| || ||| | ||||||||| |||| |
|
|
| T |
13270843 |
ttacccaactcttcttcatttttggctattcc------ctttagcaaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataaccct |
13270750 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacgg------ggttaatgttgtccccgtc |
294 |
Q |
| |
|
| ||||||||||||||||| ||||||||| |||||||||||||||| || |||||||| ||| |||||| | || | | || |||| || || |
|
|
| T |
13270749 |
tgggaaatatagaacaatatgcaaaacaatgcttcagattggaaggtaggctaaggtaactcattctcagaatggaaaaaatgctgttgctgtcaccttc |
13270650 |
T |
|
| Q |
295 |
tgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaac |
394 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||| ||||| | ||||| ||||||| ||||||| | || |||||||| |||||||||||||| |
|
|
| T |
13270649 |
ggagaaatgccacaaatcagtctccaatatcttaacccatttaatttcagagaattttctttgcaagagaatccccaatgttttcagagctaaaggcaaa |
13270550 |
T |
|
| Q |
395 |
cccccacacttttctactat |
414 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
13270549 |
cccccacatttttctactat |
13270530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 4 - 420
Target Start/End: Original strand, 6258844 - 6259260
Alignment:
| Q |
4 |
aagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattcatta |
103 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||||||| |||| |||| | ||||| |||||||||| || ||||||||||||| ||||||||||| |||| |
|
|
| T |
6258844 |
aagatcatgcatgatgaaatagtacttaccagcccagaatggcataatcgctgatggttggaaaaaagacattgacactagatcattgaagaatttatta |
6258943 |
T |
|
| Q |
104 |
cccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccctttg |
203 |
Q |
| |
|
||||||| |||||| ||||| | ||||| |||||||| |||| ||||||||||||||||||||| |||| ||| | ||||||||| ||||| | |
|
|
| T |
6258944 |
cccaactcttcttcttttttggttattccc------tttagcaaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgg |
6259037 |
T |
|
| Q |
204 |
gaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacgg------ggttaatgttgtccccgtctga |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||| ||| ||| ||||||| || | | |
|
|
| T |
6259038 |
gaaatatagaacaataagcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcaaagcggaataaatgttgctgttgtcacccttggg |
6259137 |
T |
|
| Q |
298 |
taaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccc |
397 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||| ||||||| ||||| |||| || ||||||| | || |||||||| |||||| ||||||||||| |
|
|
| T |
6259138 |
taaacgccacaaatcagtctccaatatcttaacccattcattttcagagaactttctttgcaagagaatccccaatgttttcagagctgaaggcaacccc |
6259237 |
T |
|
| Q |
398 |
ccacacttttctactatattctt |
420 |
Q |
| |
|
||||| ||||||||||| ||||| |
|
|
| T |
6259238 |
ccacatttttctactattttctt |
6259260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 56 - 420
Target Start/End: Complemental strand, 8569308 - 8568941
Alignment:
| Q |
56 |
gattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctg |
155 |
Q |
| |
|
||||| |||||||| || || ||| | |||| || |||||| |||||||||| || ||||||| ||||||||||| |||||||| | ||| ||||||| |
|
|
| T |
8569308 |
gattgctggaaaaatgaaatggactccagatcatcgaagaactcattacccagctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctg |
8569209 |
T |
|
| Q |
156 |
ccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaag |
255 |
Q |
| |
|
|||||||||||||||| || ||| || | ||| ||||| ||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
8569208 |
ccatccaaagcttgatcaattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatg |
8569109 |
T |
|
| Q |
256 |
gtaattcaatctcagtacggggttaat---gttgtccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttg |
352 |
Q |
| |
|
|||| ||||||||| ||| |||||||| | ||| || | ||||||||||||||||||||||||||||| ||| ||||||| || | | ||||| |
|
|
| T |
8569108 |
gtaactcaatctcaatactgggttaatttcatcgtcacccttcgataaatgccacatatcagtctccaatatgttagaccattcaccttgagaaaatttt |
8569009 |
T |
|
| Q |
353 |
ttttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactatattctt |
420 |
Q |
| |
|
||||||| | | || |||||||| | ||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
8569008 |
ctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacacttttctacaatcttctt |
8568941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6265330 - 6265752
Alignment:
| Q |
1 |
gacaagatcgttcatgatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattca |
100 |
Q |
| |
|
||||||||| | |||||| |||||| | ||||| | |||||||| ||| |||||||||||||||||| || ||||||||||| | || |||||||||| |
|
|
| T |
6265330 |
gacaagatcatgcatgataaagtagcacttaccggtccataatggcatcaatactgattgttggaaaaatgacattgacactagttgatcgaagaattca |
6265429 |
T |
|
| Q |
101 |
ttacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccct |
200 |
Q |
| |
|
|| || |||| ||||| |||||| |||||| ||||| |||| ||| |||||||||||||||||| ||||||| |||| || || ||||||||| |||| |
|
|
| T |
6265430 |
ttccctaactcttctttgcttttgtttcttccgcaacaatttaacaaaccttctgccatccaaagcctgattaattcaccctcctcaaactcataaccct |
6265529 |
T |
|
| Q |
201 |
ttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaat---gttgtccccgtctga |
297 |
Q |
| |
|
| |||| |||| ||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| | ||||| |||||| || || | |
|
|
| T |
6265530 |
tgggaagattagaccaacaagcaaaacaacgcttcagattgggagggaggctaaggtaatgcatcctcagagcaaaattaatgcagttgtcaccctcggg |
6265629 |
T |
|
| Q |
298 |
taaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaacccc |
397 |
Q |
| |
|
|||| ||||| ||||||||||||||| | || |||||||||| || ||||||| |||| || | || |||||||| |||| ||||||||||||| |
|
|
| T |
6265630 |
taaacaccacaaatcagtctccaatatctcaacccattcagttacagagaattttctttggaagagaatccccaatgttttcagagttaaaggcaacccc |
6265729 |
T |
|
| Q |
398 |
ccacacttttctactatattctt |
420 |
Q |
| |
|
||||| ||| ||||||| ||||| |
|
|
| T |
6265730 |
ccacattttgctactattttctt |
6265752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 420
Target Start/End: Original strand, 7587543 - 7587908
Alignment:
| Q |
58 |
ttgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgcc |
157 |
Q |
| |
|
|||||| ||||| || || ||| |||||| || ||||||||||||||||||| ||||||| ||||||||||||| ||||| || ||||| ||||||||| |
|
|
| T |
7587543 |
ttgttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgcc |
7587642 |
T |
|
| Q |
158 |
atccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggt |
257 |
Q |
| |
|
|||||||||||||| || ||| || | ||| |||| ||||| |||||||| |||||| | |||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
7587643 |
atccaaagcttgatcaattcatctttttcaaatacataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggatgggagattatggt |
7587742 |
T |
|
| Q |
258 |
aattcaatctcagtacggggttaatgttgtc----cccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgt |
353 |
Q |
| |
|
|| ||||||||| ||| | |||||| | || ||| || |||| |||||||||||| ||||||||||| |||| |||||||| || | | ||||| |
|
|
| T |
7587743 |
aactcaatctcaatactgagttaatttcatcaccacccttc-gatacatgccacatatctgtctccaatatcttaaaccattcagcttgagaaaattttc |
7587841 |
T |
|
| Q |
354 |
tttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactatattctt |
420 |
Q |
| |
|
|||||| | || || |||||||| | ||||| ||||||||| ||||| || ||||| || ||||| |
|
|
| T |
7587842 |
tttgcaggagtttccccaatgttttcacagctagaggcaaccctccacatttctctacaatcttctt |
7587908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 414
Target Start/End: Original strand, 6946940 - 6947296
Alignment:
| Q |
61 |
ttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatc |
160 |
Q |
| |
|
|||||||||||| |||||| | |||| | |||| | ||||||||| |||| ||||||| |||||||||||| |||||||| | ||| |||||||||||| |
|
|
| T |
6946940 |
ttggaaaaacgaaattgactcaagatcactgaaaatttcattacctaactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatc |
6947039 |
T |
|
| Q |
161 |
caaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaat |
260 |
Q |
| |
|
||||||||||| || ||| || | ||| ||| ||||| ||||| || || ||||| ||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
6947040 |
caaagcttgatcaattcatctttttcaaatgtataacccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaac |
6947139 |
T |
|
| Q |
261 |
tcaatctcagtacggggttaa---tgttgtccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttg |
357 |
Q |
| |
|
|||||||||| || || |||| |||||||||||||| |||| |||||||||||||||||||||| | ||||||||| || | | || || ||| | |
|
|
| T |
6947140 |
tcaatctcagcactggattaattttgttgtccccgtctaataatcgccacatatcagtctccaatatctgcatccattcatcttgagaaaacttttttcg |
6947239 |
T |
|
| Q |
358 |
caataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactat |
414 |
Q |
| |
|
||| | ||| | || || || || ||||||||||||||| |||||||| || ||||| |
|
|
| T |
6947240 |
caaaagttggcccagtgattttatagctaaaggcaaccctccacacttgtccactat |
6947296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 97 - 414
Target Start/End: Complemental strand, 6554760 - 6554440
Alignment:
| Q |
97 |
ttcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatag |
196 |
Q |
| |
|
||||||||| |||| ||||||| |||||||| ||| |||||||| ||||| ||||||||||||||||||||||| || | || | ||| |||| |
|
|
| T |
6554760 |
ttcattaccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatag |
6554661 |
T |
|
| Q |
197 |
ccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgttgt---ccccgt |
293 |
Q |
| |
|
||||| || || || |||||||| ||||| |||||||| |||| |||||||||||| ||||| ||||||| ||||| | ||||||||||| |||| | |
|
|
| T |
6554660 |
cccttggggaaaatggaacaatacgcaaagcaacgctttagatccgaagggagattatggtaactcaatcttagtactgagttaatgttgtggtccccat |
6554561 |
T |
|
| Q |
294 |
ctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaa |
393 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||| |||| | | ||| || |||| | ||| ||||| || || |||||||||||| |
|
|
| T |
6554560 |
ctgataaacgccacatatcagtctccaatatcttaatccattcatgttcagaaatttttttatgcagaagttgtgccaatgattttatagctaaaggcaa |
6554461 |
T |
|
| Q |
394 |
ccccccacacttttctactat |
414 |
Q |
| |
|
||| |||||||| || ||||| |
|
|
| T |
6554460 |
ccctccacacttgtccactat |
6554440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 55 - 421
Target Start/End: Original strand, 6735655 - 6736024
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||||||| || |||||| | |||| | ||| | |||||| || |||| ||||||| |||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
6735655 |
tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttct |
6735754 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactca-cgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagatta |
253 |
Q |
| |
|
||||||||||||||||| || | | || |||| || ||| ||||| || || || |||||||| ||||| |||||||| |||| || ||||||||| |
|
|
| T |
6735755 |
gccatccaaagcttgatcaatacttcttttttaaatct-ataacccttggggaaaatggaacaataggcaaagcaacgctttagatctgatgggagatta |
6735853 |
T |
|
| Q |
254 |
aggtaattcaatctcagtacggggttaatgttgt---ccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatt |
350 |
Q |
| |
|
||||| ||||||| ||||| | ||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||| |||| | | || |
|
|
| T |
6735854 |
tggtaactcaatcttagtactgagttaatgttgtggtccccatctgataaacgccacatatcagtctccaatatcttaatccattcatgttcagaaagtt |
6735953 |
T |
|
| Q |
351 |
tgttttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactatattcttc |
421 |
Q |
| |
|
| || |||| | ||| | ||||| || || ||||| ||||||||| |||||||| || ||||| |||||| |
|
|
| T |
6735954 |
ttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccacacttctccactattttcttc |
6736024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 420
Target Start/End: Original strand, 5267724 - 5268092
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
|||||| |||||||| || ||||||||||||| || || |||| |||||||| || |||||| |||| ||| |||| | ||||| ||||| || || |
|
|
| T |
5267724 |
tgattgctggaaaaatgaaattgacactagatcatctaataattgattacccagctcttcttcgcttttttctgttccgcggcacttcagcaaaccgtcg |
5267823 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
||||||||||| |||||||| |||| || | |||| | ||| || ||||||| |||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
5267824 |
gccatccaaagtttgattaattcacctttgtcaaaccacttgcctttgggaaataaggaacaataagaaaaacagcgcttcagattggaagggagatgat |
5267923 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaatgt---tgtccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaattt |
351 |
Q |
| |
|
||||| ||||||||||||| | ||||||| |||| || ||||||||| |||||||||| ||||||||||| |||| ||||||| || | ||||||| |
|
|
| T |
5267924 |
ggtaactcaatctcagtactgaattaatgttaatgtcaccttctgataaacgccacatatctgtctccaatatcttaacccattcatgttgagagaattt |
5268023 |
T |
|
| Q |
352 |
gttttgcaata-attgccgcaatgtttctagagctaaaggcaaccccccacacttttctactatattctt |
420 |
Q |
| |
|
|| |||| | ||| || ||| |||| || ||||||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
5268024 |
tcttcgcaagagatttcc-caaagtttttacagctaaaggtaaccctccacacttatctactattttctt |
5268092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 414
Target Start/End: Complemental strand, 6520525 - 6520164
Alignment:
| Q |
56 |
gattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctg |
155 |
Q |
| |
|
|||| ||||||||| || |||||| | |||| | ||| | ||||||||| || | ||||||| ||||||| ||| ||||||| | ||| ||||||| |
|
|
| T |
6520525 |
gatttttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctg |
6520426 |
T |
|
| Q |
156 |
ccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaag |
255 |
Q |
| |
|
|||||||||||||||| || | | || | ||| | ||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
6520425 |
ccatccaaagcttgatcaatttatcttttttaaatttataacccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatg |
6520326 |
T |
|
| Q |
256 |
gtaattcaatctcagtacggggttaa---tgttgtccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttg |
352 |
Q |
| |
|
|||| ||||||||| ||| | ||||| ||| ||| | |||||||||| |||||||||||||||||||||| | ||||||||| || | | || || |
|
|
| T |
6520325 |
gtaactcaatctcaatactgagttaatggtgtggtctctgtctgataaacgccacatatcagtctccaatatctccatccattcatcttgagaaaacttt |
6520226 |
T |
|
| Q |
353 |
ttttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactat |
414 |
Q |
| |
|
||| |||| | ||| | ||||| || || ||||||||||||||| |||||||| || ||||| |
|
|
| T |
6520225 |
tttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactat |
6520164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 337
Target Start/End: Complemental strand, 4389261 - 4389019
Alignment:
| Q |
98 |
tcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagc |
197 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||| |||||||| | ||| || || || ||||||||||||||||| |||||||| | ||| | | |
|
|
| T |
4389261 |
tcattacccaactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaagcttgattaattcacgcttgtcaaaaatgtgac |
4389162 |
T |
|
| Q |
198 |
cctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatg---ttgtccccgtc |
294 |
Q |
| |
|
| || |||||||| |||||||||| ||||||||| || ||| |||||||||||| | ||||| ||||||||||||| | |||||| ||||| || || |
|
|
| T |
4389161 |
ctttgggaaatatggaacaataagaaaaacaacgtttaagaatggaagggagatgatggtaactcaatctcagtactgaattaatgttattgtcaccttc |
4389062 |
T |
|
| Q |
295 |
tgataaatgccacatatcagtctccaatattttaatccattca |
337 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
4389061 |
tgataaatgccacatatcggtctccaatatcctaacccattca |
4389019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 337
Target Start/End: Complemental strand, 6449151 - 6448866
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||||||| || |||||| | |||| | ||| | ||||||||| |||| ||||||| |||||||| ||| |||||||| | || |||||| |
|
|
| T |
6449151 |
tgattgttggaaaaatgaaattgactcaagatcacagaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcaacataccttct |
6449052 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
||||||||||||||||| || ||| ||| | ||| ||| ||||| || || || || ||||| ||||| |||| ||| ||| |||||||||||||| |
|
|
| T |
6449051 |
gccatccaaagcttgatcaattcatcctttttaaatctataacccttagggaaaatggagcaataggcaaagcaacactttagactggaagggagattat |
6448952 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaatg---ttgtccccgtctgataaatgccacatatcagtctccaatattttaatccattca |
337 |
Q |
| |
|
||||| ||||||||||||| | ||||||| | ||| | |||||||||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
6448951 |
ggtaactcaatctcagtactgagttaatggaatggtctctgtctgataaacgccacatatcagtctccaatatcttcatccattca |
6448866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 8471229 - 8471443
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||| ||| || || ||| | |||| || ||||||||||||||||||| ||| ||| |||||||||||| ||||| || ||||| |||||| |
|
|
| T |
8471229 |
tgattgttggagaaatgaaatggactcaagatcatcaaagaattcattacccaactcttcctcacttttgtctcttctgcaacatttcagcaaaccttct |
8471328 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
||||||||||||||||| || ||| | | | ||||||| | ||||| ||||||||||| || || |||||||| ||||||||||| |||||||| ||| |
|
|
| T |
8471329 |
gccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattagaagggaggttat |
8471428 |
T |
|
| Q |
255 |
ggtaattcaatctca |
269 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
8471429 |
ggtaactcaatctca |
8471443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 92 - 420
Target Start/End: Original strand, 5298436 - 5298767
Alignment:
| Q |
92 |
aagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaact |
191 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || ||| || ||||| | ||| |||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
5298436 |
aagaattcattacccaactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattcagccttgcaaaaaa |
5298535 |
T |
|
| Q |
192 |
catagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgt---tgtc |
288 |
Q |
| |
|
||| || |||||||||| |||||||||| |||||||||||||||||| |||||||||| | || || |||| |||| || | |||||||| | || |
|
|
| T |
5298536 |
tataacctcttggaaatatggaacaataagaaaaacaacgcttcagatttgaagggagatgatggaaactcaacctcaaaactgagttaatgttactctc |
5298635 |
T |
|
| Q |
289 |
cccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaa |
388 |
Q |
| |
|
|| ||||||||| ||||| ||| ||||||||||| |||| ||||||| || | ||||||| || |||| | | || ||||| || || ||||| | |
|
|
| T |
5298636 |
accctctgataaacaccacagatctgtctccaatatcttaacccattcacgttgagagaattttcttcgcaagagattccccaatgcttttacagctaga |
5298735 |
T |
|
| Q |
389 |
ggcaaccccccacacttttctactatattctt |
420 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| |
|
|
| T |
5298736 |
ggcaaccctccacacttttctacgattttctt |
5298767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 337
Target Start/End: Complemental strand, 6480346 - 6480061
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||||||| || |||||| | |||| | ||| | ||||||||| |||| ||||||| |||||| | ||| |||||||| | ||| |||||| |
|
|
| T |
6480346 |
tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttct |
6480247 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
||||||||||||||||| || ||| || | ||| ||| ||||| || || || ||||| | ||||| |||||||| ||| |||||||||||| |
|
|
| T |
6480246 |
gccatccaaagcttgatcaattcatctttttcaaatgtataacccttggggaaaatggaacagaaggcaaagcaacgcttttgatcggaagggagattgt |
6480147 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaat---gttgtccccgtctgataaatgccacatatcagtctccaatattttaatccattca |
337 |
Q |
| |
|
||||| |||||||||| || || ||||| ||||||| ||||||||||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
6480146 |
ggtaactcaatctcagcactggattaattttgttgtccacgtctgataaacgccacatatcagtctccaatatcttcatccattca |
6480061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 333
Target Start/End: Original strand, 8589394 - 8589675
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
|||| |||||||||| || |||||| | |||| | ||| | ||||||||| |||| ||||||| |||||| | ||| |||||||| | || |||||| |
|
|
| T |
8589394 |
tgatcgttggaaaaatgaaattgactcaagatcaccgaaaatttcattacctaactcttcttcacttttgtgtgatccgcaacacttcaataaaccttct |
8589493 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
|||||||| |||||||| || |||| || | ||| ||||| ||||| ||||| || |||||||||| ||| ||| |||| ||| |||||||||||||| |
|
|
| T |
8589494 |
gccatccagagcttgatcaattcacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaagggagattat |
8589593 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaatgttg---tccccgtctgataaatgccacatatcagtctccaatattttaatcca |
333 |
Q |
| |
|
||||| | |||||||| || | ||| ||| || ||||| ||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
8589594 |
ggtaacttaatctcagaactgagtttatgctgtgttccccatctgataaacgccacatattagtctccaatatcttaatcca |
8589675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 414
Target Start/End: Original strand, 8454319 - 8454681
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||||||| || |||||||| |||| | ||| ||||||||| |||| ||||||| || ||| ||| |||||||| | ||| |||||| |
|
|
| T |
8454319 |
tgattgttggaaaaaagaaattgacacaagatcagcgaaactttcattaccaaactcttcttcacttctgttagatccgcaacacttcaacaaaccttct |
8454418 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
|||||||||||| |||| | ||| || | ||| | || ||||| ||||| || |||||||| | ||| |||||||| ||||| |||||||||||| |
|
|
| T |
8454419 |
gccatccaaagcatgatcagttcatcttttttaaatttatgacccttgggaaaaatggaacaataggaaaagcaacgctttagattagaagggagattat |
8454518 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaatgttg---tccccgtctgataaatgccacatatcagtctccaatattttaatccattcagtttcacagaattt |
351 |
Q |
| |
|
||||| ||||||||||||| | ||||| |||| || | | ||||||| |||||||||||||||||||||| |||||||||||| |||| | ||| | |
|
|
| T |
8454519 |
ggtaactcaatctcagtactgagttaacgttgtgatctacttttgataaacgccacatatcagtctccaatatattaatccattcatgttcagaaaatgt |
8454618 |
T |
|
| Q |
352 |
gttttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacacttttctactat |
414 |
Q |
| |
|
|| ||| | ||| | ||||| || || ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
8454619 |
tttccgcagaagttggcccaatgattttatagctaaaggcaaccctccacacttttccactat |
8454681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 269
Target Start/End: Complemental strand, 6839266 - 6839054
Alignment:
| Q |
57 |
attgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgc |
156 |
Q |
| |
|
|||||| |||||| || || ||| |||| |||| | ||||||||| ||||| | ||||||| ||||||||||||| || | || ||||| |||||||| |
|
|
| T |
6839266 |
attgttcgaaaaatgaaatggactctaggtaatccatgaattcatttcccaattcttcttcacttttgtctcttccgcagtatttcagcaaaccttctgc |
6839167 |
T |
|
| Q |
157 |
catccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaagg |
256 |
Q |
| |
|
||||||||||||||| || ||| | | | ||||||| | ||| | ||||||| |||||| || |||||||| || |||| | |||||||||| ||| || |
|
|
| T |
6839166 |
catccaaagcttgatcaattcatccctgtcaaactcaaaacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactggaagggaggttatgg |
6839067 |
T |
|
| Q |
257 |
taattcaatctca |
269 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
6839066 |
taactcaatctca |
6839054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 5249985 - 5250114
Alignment:
| Q |
203 |
ggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacggggttaatgt---tgtccccgtctgata |
299 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| ||| | ||||||||| | ||||| ||||||||||||| | ||||||| | || || ||||||| |
|
|
| T |
5249985 |
ggaaatatggaacaataagaaaagcaacgcttaagaatagaagggagacaatggtaactcaatctcagtactgaattaatgttactctcgccctctgata |
5250084 |
T |
|
| Q |
300 |
aatgccacatatcagtctccaatattttaa |
329 |
Q |
| |
|
|| |||||||||| ||||||||||| |||| |
|
|
| T |
5250085 |
aacgccacatatctgtctccaatatcttaa |
5250114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 6168836 - 6168946
Alignment:
| Q |
304 |
ccacatatcagtctccaatattttaatccattcagtttcacagaatttgttttgcaataattgccgcaatgtttctagagctaaaggcaaccccccacac |
403 |
Q |
| |
|
||||| ||||||||| ||||| |||| ||||||| ||||| ||||| | ||||||| | || |||||||| |||||| |||||| |||||||||| |
|
|
| T |
6168836 |
ccacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgtttttagagcaaaaggcgaccccccacat |
6168935 |
T |
|
| Q |
404 |
ttttctactat |
414 |
Q |
| |
|
||||||||||| |
|
|
| T |
6168936 |
ttttctactat |
6168946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 35140747 - 35140488
Alignment:
| Q |
16 |
gatgaagtagtatttaccagcccataatgacatagttactgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttct |
115 |
Q |
| |
|
|||||| ||| | ||||||||||| |||| || | || |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
35140747 |
gatgaaatagcacttaccagcccagaatggcagaattgctgatttttggaaaaacgacattgacactagatcattgaagaatttattacccaactcttct |
35140648 |
T |
|
| Q |
116 |
tcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaac |
215 |
Q |
| |
|
||| ||||| || || |||||| ||||||||| ||||||| |||||||||||||||||| || || | ||||||||| ||||| |||||||||||| |
|
|
| T |
35140647 |
tcatttttggctatttcccaaccctttagcaaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaat |
35140548 |
T |
|
| Q |
216 |
aataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatctcagtacgg |
275 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||| ||| |||||| |||| |
|
|
| T |
35140547 |
aatatgcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcagaacgg |
35140488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 337
Target Start/End: Complemental strand, 6573660 - 6573374
Alignment:
| Q |
54 |
ctgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttc |
153 |
Q |
| |
|
|||||||||||||||| || || ||| |||||| || ||||||||||||||||||| || |||| ||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
6573660 |
ctgattgttggaaaaatgaaatggactctagatcatccaagaattcattacccaactcttgttcacttttgtctcttccgcaacatttcagcaaaccttc |
6573561 |
T |
|
| Q |
154 |
tgccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagatta |
253 |
Q |
| |
|
||||||||||| ||||| || ||| || | ||| | ||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
6573560 |
agccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaatatgcaaaacaacgctttagattggaagggagatta |
6573461 |
T |
|
| Q |
254 |
aggtaattcaatctcagtacggggttaatgttgtc----cccgtctgataaatgccacatatcagtctccaatattttaatccattca |
337 |
Q |
| |
|
| ||| ||||||||| ||| | |||||| | || ||| || |||| ||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
6573460 |
tgataactcaatctcaataccgagttaatttcatcattgcccttc-gatacatgccacatatcagtttccaatatcttaaaccattca |
6573374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 337
Target Start/End: Complemental strand, 7841 - 7556
Alignment:
| Q |
55 |
tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct |
154 |
Q |
| |
|
||||||||||||||| || |||||| | |||| | ||| | |||||| || |||| ||||||| |||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
7841 |
tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttct |
7742 |
T |
|
| Q |
155 |
gccatccaaagcttgattaactcacgcttctaaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaa |
254 |
Q |
| |
|
|||||||||||||||| || | || | ||| ||||||||| ||||| || |||||||| | ||| |||||| | |||| |||||||||||| |
|
|
| T |
7741 |
cccatccaaagcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaataggaaaagcaacgccttagatcagaagggagattat |
7642 |
T |
|
| Q |
255 |
ggtaattcaatctcagtacggggttaatgttgt---ccccgtctgataaatgccacatatcagtctccaatattttaatccattca |
337 |
Q |
| |
|
||||| ||||||||||||| | ||||||| ||| |||||||||||||| ||||||| || ||||||||||| |||||||||||| |
|
|
| T |
7641 |
ggtaactcaatctcagtactgagttaatggtgtgatccccgtctgataaacgccacatgtcggtctccaatatcttaatccattca |
7556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 267
Target Start/End: Complemental strand, 25242450 - 25242285
Alignment:
| Q |
102 |
tacccaactgttcttcagttttgtctcttccccaacactttagcaagccttctgccatccaaagcttgattaactcacgcttctaaaactcatagccctt |
201 |
Q |
| |
|
||||||||| ||||||| |||||| | ||| |||||||| |||||||||| ||| ||||||||||||||||| |||| ||| |||| |||| || || |
|
|
| T |
25242450 |
tacccaactcttcttcacttttgtttgttctacaacacttcagcaagccttatgctatccaaagcttgattaattcacccttgcaaaaagcataaccttt |
25242351 |
T |
|
| Q |
202 |
tggaaatatagaacaataagcaaaacaacgcttcagattggaagggagattaaggtaattcaatct |
267 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
25242350 |
aggaaatatggaacagtaactaaaacaacgcttcagattggaagggagattatggtaactcaatct |
25242285 |
T |
|
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