View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19843_low_7 (Length: 384)

Name: NF19843_low_7
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19843_low_7
NF19843_low_7
[»] chr4 (9 HSPs)
chr4 (10-367)||(53214296-53214657)
chr4 (270-356)||(4710303-4710390)
chr4 (299-356)||(42451843-42451901)
chr4 (282-319)||(16936094-16936131)
chr4 (139-213)||(11181475-11181549)
chr4 (144-194)||(27059341-27059391)
chr4 (116-165)||(9074413-9074462)
chr4 (100-157)||(29152290-29152347)
chr4 (283-319)||(34981917-34981953)
[»] chr8 (17 HSPs)
chr8 (233-317)||(24190891-24190975)
chr8 (115-215)||(17018577-17018676)
chr8 (115-215)||(17549014-17549113)
chr8 (283-319)||(39872185-39872221)
chr8 (287-356)||(5345311-5345380)
chr8 (128-204)||(2287709-2287785)
chr8 (283-319)||(7130619-7130655)
chr8 (283-319)||(17944828-17944864)
chr8 (132-213)||(12733599-12733680)
chr8 (282-319)||(42431689-42431726)
chr8 (283-319)||(1797756-1797792)
chr8 (283-319)||(7130147-7130183)
chr8 (282-314)||(30201964-30201996)
chr8 (283-319)||(35348683-35348719)
chr8 (320-356)||(36110400-36110436)
chr8 (320-356)||(41720854-41720890)
chr8 (283-319)||(45156032-45156068)
[»] chr7 (6 HSPs)
chr7 (234-356)||(15328843-15328966)
chr7 (287-319)||(16488185-16488217)
chr7 (253-356)||(36645061-36645165)
chr7 (283-313)||(42629204-42629234)
chr7 (304-356)||(48582278-48582331)
chr7 (282-314)||(36653730-36653762)
[»] chr1 (3 HSPs)
chr1 (245-348)||(46150397-46150501)
chr1 (114-177)||(32979388-32979450)
chr1 (121-215)||(7492615-7492709)
[»] chr5 (8 HSPs)
chr5 (238-356)||(5655276-5655395)
chr5 (283-319)||(25868123-25868159)
chr5 (282-319)||(14410768-14410805)
chr5 (283-319)||(25994946-25994982)
chr5 (283-319)||(14410253-14410289)
chr5 (283-319)||(25868507-25868543)
chr5 (283-319)||(32804891-32804927)
chr5 (285-356)||(36170485-36170557)
[»] chr2 (12 HSPs)
chr2 (238-356)||(26424933-26425052)
chr2 (284-319)||(38571671-38571706)
chr2 (246-319)||(6858689-6858762)
chr2 (283-318)||(3816313-3816348)
chr2 (223-265)||(6858711-6858753)
chr2 (299-356)||(6858766-6858824)
chr2 (283-312)||(304343-304372)
chr2 (283-319)||(303424-303460)
chr2 (283-311)||(6402361-6402389)
chr2 (283-319)||(19004823-19004859)
chr2 (283-319)||(33710909-33710945)
chr2 (270-314)||(37940135-37940179)
[»] scaffold0007 (1 HSPs)
scaffold0007 (283-319)||(186963-186999)
[»] chr6 (6 HSPs)
chr6 (110-161)||(9437516-9437567)
chr6 (127-194)||(32427760-32427827)
chr6 (115-162)||(33680732-33680779)
chr6 (283-319)||(31778844-31778880)
chr6 (115-215)||(32419901-32420001)
chr6 (115-215)||(32425742-32425842)
[»] chr3 (4 HSPs)
chr3 (283-318)||(53038903-53038938)
chr3 (126-164)||(26719526-26719564)
chr3 (114-167)||(26741017-26741070)
chr3 (319-356)||(38810084-38810121)
[»] scaffold0471 (1 HSPs)
scaffold0471 (320-356)||(269-305)
[»] scaffold0150 (1 HSPs)
scaffold0150 (115-167)||(10915-10967)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 53214657 - 53214296
Alignment:
Q  10 aataatataatccataaacaatattttagtggttcagatcattacatctaaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214657 aataatataatccataaacaatattttagtggttcagatcattacatctgaaacatgtcaagaatgtgcaaaaacttctgcattgagggttttgtcatat 53214558  T
Q  110 tttggattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataa 209  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53214557 tttggattatttaatctgaatcagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataa 53214458  T
Q  210 attggta--tttggtttaactcacacagggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgt--gac 305  Q
    |||||||  ||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||  |||    
T  53214457 attggtatgtttggtttaactcacgcatggtttataacctacgtgagttaactcacacaggatttataaccagtatgagttaactcatgcagcgtgagac 53214358  T
Q  306 ttaagtcacacatggtattttcgaaagtttagttgggagcgaacaatttttcatcggaggag 367  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||||| || |||||||    
T  53214357 ttaagtcacgcatgatattttcgaaagtttagttgggagcgagcaatttttgatgggaggag 53214296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 4710390 - 4710303
Alignment:
Q  270 tttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||| | ||||||||||||| | |  |||||||||||||| |||| |||||||| ||||||| ||||||||||| ||||||||    
T  4710390 tttataaccggtatgagttaactcacgtaatgtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttt 4710303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 42451901 - 42451843
Alignment:
Q  299 gcgtgacttaagtcacacatg-gtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||    
T  42451901 gcgtgacttaagtcacacatgagtattttcgaaagtttggttgggagcaagcaattttt 42451843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 16936094 - 16936131
Alignment:
Q  282 atgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||| |||||||||||||||||||||    
T  16936094 atgagttaactcatgcggcgtgacttaagtcacacatg 16936131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 11181475 - 11181549
Alignment:
Q  139 tacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattg 213  Q
    |||||||||||| | |||||||||| |||  |||||||| |||| | || |||||||| || |||||||||||||    
T  11181475 tacaagatttttgtatggtccacatcgcactaatagtttctatgatgcatgacgcataaaaacttctataaattg 11181549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 27059341 - 27059391
Alignment:
Q  144 gatttttctgtggtccacattgcatcaatagtttatatggtccacgacgca 194  Q
    ||||||||| |||||||||||||| | | ||||||| ||||||||||||||    
T  27059341 gatttttctatggtccacattgcaccgacagtttatgtggtccacgacgca 27059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 9074462 - 9074413
Alignment:
Q  116 ttatttaatctgaaccagtcaaatacaagatttttctgtggtccacattg 165  Q
    |||| ||||| ||| | |||||||||||||||||| ||||||||||||||    
T  9074462 ttatataatccgaatctgtcaaatacaagatttttatgtggtccacattg 9074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 29152347 - 29152290
Alignment:
Q  100 tttgtcatattttggattatttaatctgaaccagtcaaatacaagatttttctgtggt 157  Q
    ||||||||||||   |||||||||| ||||||||||||||| ||| ||||| ||||||    
T  29152347 tttgtcatatttcatattatttaatatgaaccagtcaaatataaggtttttttgtggt 29152290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 34981917 - 34981953
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||| |||||||||| |||||||||||||||||||||    
T  34981917 tgagataactcatgcggcgtgacttaagtcacacatg 34981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 24190891 - 24190975
Alignment:
Q  233 cagggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca 317  Q
    ||||||||||||||||| | |||||||||||  | |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  24190891 cagggtttataacctacatgagttaactcacgtatgatttataaccagcgtgagttaactcacgcagcgtgacttaagtcacaca 24190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 17018577 - 17018676
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 214  Q
    ||||| ||||||||||||||||| |||| || |||| ||||||||||||||||  ||  |||||| |||||||||| |||  ||| ||||||||||||||    
T  17018577 attatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcactgaa-cttctataaattgg 17018675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 17549014 - 17549113
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 214  Q
    ||||| ||||||||||||||||| |||| || |||| ||||||||||||||||  ||  |||||| |||||||||| |||  ||| ||||||||||||||    
T  17549014 attatataatctgaaccagtcaagtacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcactgaa-cttctataaattgg 17549112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 39872185 - 39872221
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||||||||||||||||||    
T  39872185 tgagttaactcatgcagcgtgacttaagtcacacatg 39872221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 5345380 - 5345311
Alignment:
Q  287 ttaactcatgcagcgtgacttaagtcacacatggtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    |||||| | ||||||||||||||||||  |||||| |||||| ||||||  |||||||||| ||||||||    
T  5345380 ttaacttacgcagcgtgacttaagtcatgcatggtgttttcggaagtttgattgggagcgagcaattttt 5345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 2287785 - 2287709
Alignment:
Q  128 aaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttc 204  Q
    ||||| |||| |||| ||||||||||||||||||||| || | | | |||||||||||||||| ||| |||| ||||    
T  2287785 aaccaatcaagtacatgatttttctgtggtccacattacaccgacaatttatatggtccacgaggcaaagaaacttc 2287709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 7130619 - 7130655
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7130619 tgagttaactcatgcagcgtgacttaagtcacgcatg 7130655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 17944828 - 17944864
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17944828 tgagttaactcatgcagcgttacttaagtcacacatg 17944864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 12733680 - 12733599
Alignment:
Q  132 agtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattg 213  Q
    |||||| |||||||||||| |||||| ||||||||| ||| | ||||| || || | || ||| | ||||||||||||||||    
T  12733680 agtcaagtacaagatttttatgtggtacacattgcaccaacaatttatgtgatcaatgatgcacataaccttctataaattg 12733599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 42431726 - 42431689
Alignment:
Q  282 atgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  42431726 atgagttaactcatgcagcatgacttaagtcacgcatg 42431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 1797792 - 1797756
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||| | ||||||||||||||||||||||||    
T  1797792 tgagttaacttacgcagcgtgacttaagtcacacatg 1797756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 7130183 - 7130147
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  7130183 tgagttaactcacgcagcgtgacttaagtcacgcatg 7130147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 30201964 - 30201996
Alignment:
Q  282 atgagttaactcatgcagcgtgacttaagtcac 314  Q
    ||||||||||||||||||| |||||||||||||    
T  30201964 atgagttaactcatgcagcatgacttaagtcac 30201996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 35348719 - 35348683
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  35348719 tgagttaattcatgcagcgtgacttaagtcacgcatg 35348683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 36110400 - 36110436
Alignment:
Q  320 gtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||||||||||  |||||||||||||||||||    
T  36110400 gtattttcgaaagtttgattgggagcgaacaattttt 36110436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 41720890 - 41720854
Alignment:
Q  320 gtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  41720890 gtattttcaaaagtttagttaggagcgaacaattttt 41720854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 45156068 - 45156032
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  45156068 tgagttaactcatgcagcgtgatttaagtcacgcatg 45156032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 15328966 - 15328843
Alignment:
Q  234 agggtttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg-gtattttcgaaag 332  Q
    |||||||||||||||| | ||||||||||  || ||||||||||||| |||| |||| |||| |||||| ||||||||||  || |  |||||||||| |    
T  15328966 agggtttataacctacatgagttaactcaagcaggatttataaccagcatgaattaattcatacagcgtaacttaagtcatgcaagaatattttcgaatg 15328867  T
Q  333 tttagttgggagcgaacaattttt 356  Q
    ||| |||||||| |||||||||||    
T  15328866 tttggttgggagtgaacaattttt 15328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 16488185 - 16488217
Alignment:
Q  287 ttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||||||||||||||    
T  16488185 ttaactcatgcagcgtgacttaagtcacacatg 16488217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 356
Target Start/End: Complemental strand, 36645165 - 36645061
Alignment:
Q  253 agttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaa 351  Q
    ||||||||||| |||||||||||| | |  ||||||||||||  || | |||| ||| |||| || || |||||||| |||||| ||||||||||| |||    
T  36645165 agttaactcacgcaagatttataatcggcgtgagttaactcacacaacatgacataaatcacgcaggggtattttcggaagtttcgttgggagcgagcaa 36645066  T
Q  352 ttttt 356  Q
    |||||    
T  36645065 ttttt 36645061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 42629204 - 42629234
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtca 313  Q
    |||||||||||||||||||||||||||||||    
T  42629204 tgagttaactcatgcagcgtgacttaagtca 42629234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 48582278 - 48582331
Alignment:
Q  304 acttaagtcacacat-ggtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||||||||  ||||||||||||||||| ||||||||| | ||||||||    
T  48582278 acttaagtcacacaaaggtattttcgaaagtttggttgggagcaagcaattttt 48582331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 36653730 - 36653762
Alignment:
Q  282 atgagttaactcatgcagcgtgacttaagtcac 314  Q
    |||||||||||| ||||||||||||||||||||    
T  36653730 atgagttaactcttgcagcgtgacttaagtcac 36653762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 46150397 - 46150501
Alignment:
Q  245 cctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagtttagttggga 343  Q
    ||||||| |||||| |||| |||||||||||||  |  |||||||||||| |||||||||||||||| || || |||||||||  ||||||| |||||||    
T  46150397 cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga 46150496  T
Q  344 gcgaa 348  Q
    |||||    
T  46150497 gcgaa 46150501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 32979388 - 32979450
Alignment:
Q  114 gattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagttt 177  Q
    |||||| ||||||||||||||||| ||||||| |||| |||| |||| |||||||| |||||||    
T  32979388 gattatataatctgaaccagtcaagtacaaga-ttttatgtgatccatattgcatcgatagttt 32979450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 7492615 - 7492709
Alignment:
Q  121 taatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattggt 215  Q
    ||||| |||||| |||| |||||||||||| | || || |||||||| |   | ||||||||||| |||||||| | || |||||||||||||||    
T  7492615 taatcggaaccattcaagtacaagatttttatatgatcaacattgcaccggcaatttatatggtctacgacgcacaaaaacttctataaattggt 7492709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 356
Target Start/End: Complemental strand, 5655395 - 5655276
Alignment:
Q  238 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagttta 336  Q
    |||||||||||| | ||||||||| | ||  ||||||||||    |||||||||||   ||||||||||||||||||||| |  |||||||| ||||||     
T  5655395 tttataacctacatgagttaactcgcgcagaatttataacctatgtgagttaactcgcacagcgtgacttaagtcacacaggaatattttcggaagtttg 5655296  T
Q  337 gttgggagcgaacaattttt 356  Q
    ||||| ||||||||||||||    
T  5655295 gttggaagcgaacaattttt 5655276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 25868159 - 25868123
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||||||||||||||||||    
T  25868159 tgagttaactcatgcagcgtgacttaagtcacacatg 25868123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 14410768 - 14410805
Alignment:
Q  282 atgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  14410768 atgagttaactcacgcagcgtgacttaagtcacacatg 14410805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 25994946 - 25994982
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25994946 tgagttaactcatgcagcgtgacttaagtcacgcatg 25994982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 14410289 - 14410253
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  14410289 tgagttaactcacgcagcgtgacttaagtcacgcatg 14410253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 25868507 - 25868543
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  25868507 tgagttaacttatgcagcgtgacttaagtcacgcatg 25868543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 32804891 - 32804927
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||| || |||||||||||||||||||||    
T  32804891 tgagttaactcacgcggcgtgacttaagtcacacatg 32804927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 36170485 - 36170557
Alignment:
Q  285 agttaactcatgcagcgtgacttaagtcacacatgg-tattttcgaaagtttagttgggagcgaacaattttt 356  Q
    |||||||||| ||||| ||| |||| |||| || || ||||||||||||||||||||| |||||  |||||||    
T  36170485 agttaactcaagcagcttgagttaactcacgcaggggtattttcgaaagtttagttggtagcgagtaattttt 36170557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 356
Target Start/End: Complemental strand, 26425052 - 26424933
Alignment:
Q  238 tttataacctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacaca-tggtattttcgaaagttta 336  Q
    |||||||||||||| ||||||||||  |||| ||||||||| |   ||||||||||| || ||||||||||| |||| ||  |||||||||||||||||     
T  26425052 tttataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcacgcggcgtgacttaaatcacgcaggggtattttcgaaagtttg 26424953  T
Q  337 gttgggagcgaacaattttt 356  Q
     || | ||||| ||||||||    
T  26424952 attagaagcgaccaattttt 26424933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 38571706 - 38571671
Alignment:
Q  284 gagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    ||||||||||||||||||||||||||||||||||||    
T  38571706 gagttaactcatgcagcgtgacttaagtcacacatg 38571671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 6858762 - 6858689
Alignment:
Q  246 ctacgtaagttaactcacacaagatttataaccagaatgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||| ||||||||||| |||| |||||||||    ||||||||||||  | |||||||||||||||||||||    
T  6858762 ctacgtgagttaactcacgcaaggtttataacctacgtgagttaactcacactgcgtgacttaagtcacacatg 6858689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 3816313 - 3816348
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacat 318  Q
    |||||||||||| |||||||||||||||||||||||    
T  3816313 tgagttaactcacgcagcgtgacttaagtcacacat 3816348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 6858753 - 6858711
Alignment:
Q  223 ttaactcacacagggtttataacctacgtaagttaactcacac 265  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  6858753 ttaactcacgcaaggtttataacctacgtgagttaactcacac 6858711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 6858766 - 6858824
Alignment:
Q  299 gcgtgacttaagtcacaca-tggtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    |||||||||||||||| || |||||| ||||||||||| |||| ||||| |||||||||    
T  6858766 gcgtgacttaagtcacgcagtggtatattcgaaagtttggttgagagcggacaattttt 6858824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Original strand, 304343 - 304372
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtc 312  Q
    ||||||||||||||||||||||||||||||    
T  304343 tgagttaactcatgcagcgtgacttaagtc 304372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 303460 - 303424
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||| |||||| |||||||||||||||||||||    
T  303460 tgagttaattcatgcggcgtgacttaagtcacacatg 303424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 6402361 - 6402389
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagt 311  Q
    |||||||||||||||||||||||||||||    
T  6402361 tgagttaactcatgcagcgtgacttaagt 6402389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 19004859 - 19004823
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  19004859 tgagttaactcatgcggcgtgacttaagtcacgcatg 19004823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 33710945 - 33710909
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  33710945 tgagttaactcacgcagcgtgacttaagtcacgcatg 33710909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 37940135 - 37940179
Alignment:
Q  270 tttataaccagaatgagttaactcatgcagcgtgacttaagtcac 314  Q
    ||||||||| |  |||||||||||||| |||||||||||||||||    
T  37940135 tttataacctgcgtgagttaactcatgtagcgtgacttaagtcac 37940179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 186999 - 186963
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    |||||||||||||||| ||||||||||||||||||||    
T  186999 tgagttaactcatgcaacgtgacttaagtcacacatg 186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 9437567 - 9437516
Alignment:
Q  110 tttggattatttaatctgaaccagtcaaatacaagatttttctgtggtccac 161  Q
    |||||||||| |||| ||||  |||||| |||||||||||||||||||||||    
T  9437567 tttggattatataatatgaattagtcaagtacaagatttttctgtggtccac 9437516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 32427760 - 32427827
Alignment:
Q  127 gaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgca 194  Q
    |||||||| || |||| ||||||||||||||||| |||||| | | | ||||| ||||||||||||||    
T  32427760 gaaccagttaagtacatgatttttctgtggtccatattgcaccgacaatttatttggtccacgacgca 32427827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 33680732 - 33680779
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccaca 162  Q
    ||||| ||||||||||||||||| ||||  ||||||||||||||||||    
T  33680732 attatataatctgaaccagtcaagtacataatttttctgtggtccaca 33680779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 31778880 - 31778844
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacatg 319  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  31778880 tgagttaactcatgcggcgtgacttaagtcacgcatg 31778844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 32419901 - 32420001
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 214  Q
    ||||| ||||| |||| ||||||  |||  |||||| ||||||| |||||| | ||||| ||| ||||||| ||| |||||| ||  |||||||||||||    
T  32419901 attatataatccgaactagtcaagcacacaatttttatgtggtctacattgaaccaataatttctatggtctacgtcgcataaaaaattctataaattgg 32420000  T
Q  215 t 215  Q
    |    
T  32420001 t 32420001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 32425742 - 32425842
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgcatcaatagtttatatggtccacgacgcatagaaccttctataaattgg 214  Q
    ||||| ||||| |||| ||||||  |||  |||||| ||||||| |||||| | ||||| ||| ||||||| ||| |||||| ||  |||||||||||||    
T  32425742 attatataatccgaactagtcaagcacacaatttttatgtggtctacattgaaccaataatttctatggtctacgtcgcataaaaaattctataaattgg 32425841  T
Q  215 t 215  Q
    |    
T  32425842 t 32425842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 53038938 - 53038903
Alignment:
Q  283 tgagttaactcatgcagcgtgacttaagtcacacat 318  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53038938 tgagttaactcatgcggcgtgacttaagtcacacat 53038903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 26719526 - 26719564
Alignment:
Q  126 tgaaccagtcaaatacaagatttttctgtggtccacatt 164  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  26719526 tgaaccagtcaaatacaagattttgatgtggtccacatt 26719564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 26741017 - 26741070
Alignment:
Q  114 gattatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgca 167  Q
    |||||| |||| ||||||||||||| ||||||||||  | ||||||||||||||    
T  26741017 gattatataatttgaaccagtcaaacacaagattttgatatggtccacattgca 26741070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 38810121 - 38810084
Alignment:
Q  319 ggtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  38810121 ggtattttcgaaagttaggttgggagcgaacaattttt 38810084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 269 - 305
Alignment:
Q  320 gtattttcgaaagtttagttgggagcgaacaattttt 356  Q
    ||||||||||||||||  |||||||||||||||||||    
T  269 gtattttcgaaagtttgattgggagcgaacaattttt 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 10967 - 10915
Alignment:
Q  115 attatttaatctgaaccagtcaaatacaagatttttctgtggtccacattgca 167  Q
    ||||| ||||||||||||||||| |||| || |||| ||| ||||||||||||    
T  10967 attatataatctgaaccagtcaagtacatgaattttttgttgtccacattgca 10915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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