View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19843_low_8 (Length: 375)
Name: NF19843_low_8
Description: NF19843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19843_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 55100073 - 55100423
Alignment:
| Q |
1 |
ggactggaaaagaaatctatcatgtcatgctgacgttgacaaagaatggaccacaccacacacataaagattaaagaacgagagcgcacgtgaatatcac |
100 |
Q |
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| T |
55100073 |
ggactggaaaagaactctatcatgtcatgctgacgttgacaaagaagggaccacaccacacacataaagattaaagaacgagagcgcacgtgaatatcac |
55100172 |
T |
|
| Q |
101 |
aaggttgaaccggcctcctttgttgaaccgtttctgttaacaagcttattgttgtcgtgtccacaaaatcacataattgatttaacttaagtaattttta |
200 |
Q |
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| T |
55100173 |
aaggttgaaccggcctcctttgttgaaccgtttctgttaacaagcttattgttgtcgtgtccacaaaatcacataattg------cttaagtaattttta |
55100266 |
T |
|
| Q |
201 |
tgtgtaactgcggagaccgattctttaagatactaccaggtataatagcgacctctttcaatatataaatcaaacctttggatattttcctcgaggcaaa |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55100267 |
tgtgcaactgcggagaccgattctttaagatactaccggttataatagcgacctctttcaatatataaatcaaacctttggatattttcctcgaggtaaa |
55100366 |
T |
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| Q |
301 |
tagttgtaaggcttcgctcaagtggcattgttttggtgattttgatttgggactttg |
357 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
55100367 |
tagttgtaaggcttagctcaagtgacattgttttggtgatattgatttgggactttg |
55100423 |
T |
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