View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19844_high_1 (Length: 483)
Name: NF19844_high_1
Description: NF19844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19844_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 58 - 471
Target Start/End: Complemental strand, 52113498 - 52113085
Alignment:
| Q |
58 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacggcctcccattcgtaggt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113498 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacggcctcccattcgtaggt |
52113399 |
T |
|
| Q |
158 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatcaaccatttttcgcgcta |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113398 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatcaaccatttttcgcgcta |
52113299 |
T |
|
| Q |
258 |
atatgccaccaggcccattcatttcctcaaacccaaacgtcattgttttacttgacggaaaatcattccctgttctcttcgacaattccaaagttgaaaa |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113298 |
atatgccaccaggcccattcatttcctctaacccaaacgtcattgttttacttgacggaaaatcattccctgttctcttcgacaattccaaagttgaaaa |
52113199 |
T |
|
| Q |
358 |
acgtgacctcttcaccggaactttcctgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaa |
457 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113198 |
acgtgacctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaa |
52113099 |
T |
|
| Q |
458 |
ctcaaacgccttct |
471 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
52113098 |
ctcaaacgccttct |
52113085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 293
Target Start/End: Original strand, 12505202 - 12505235
Alignment:
| Q |
260 |
atgccaccaggcccattcatttcctcaaacccaa |
293 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
12505202 |
atgccaccaggtccattcatttcctcaaacccaa |
12505235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University