View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19844_high_6 (Length: 261)
Name: NF19844_high_6
Description: NF19844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19844_high_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 7423463 - 7423206
Alignment:
| Q |
4 |
accagctcgggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatag |
103 |
Q |
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| T |
7423463 |
accagctcgggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatag |
7423364 |
T |
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| Q |
104 |
cagttatattttctctggcccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgcttcca |
203 |
Q |
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| T |
7423363 |
cagttatattttctctggcccagagattaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgcttcca |
7423264 |
T |
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| Q |
204 |
gaattgattattattcattgtggtagttacacttggccacagaattgttagcattggt |
261 |
Q |
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| T |
7423263 |
gaattgattattattcattgtggtagttacacttggccacggaattgttagcattggt |
7423206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 7517244 - 7517071
Alignment:
| Q |
23 |
ccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatagcagttatattttctctggc |
122 |
Q |
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| T |
7517244 |
ccgtctttgtctttatagctccaataatcaaattttggtcataacttctcccgggcataatagtagtttgttccagtatagctgtgatattttctcaggc |
7517145 |
T |
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| Q |
123 |
ccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgt |
196 |
Q |
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| T |
7517144 |
ccaaagagtcactgcatgttgaaagtaatatagtttttggaatgtcgagcacgttctgtgttgactccactcgt |
7517071 |
T |
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