View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19844_low_2 (Length: 478)
Name: NF19844_low_2
Description: NF19844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19844_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 4138724 - 4138273
Alignment:
| Q |
17 |
caggcataacttaagtcgttgagccgagacatctaaaatagtttgaaaatggcctataccacatcaatgaaaccatattcaaaagtgattatctaatgat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138724 |
caggcataacttaagtcgttgagccgagacatctaaaatagtttggaaatggcctataccacatcaatgaaaccatattcaaaagtgattatctaatgat |
4138625 |
T |
|
| Q |
117 |
aagtatttatttggatgtgacaggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138624 |
aagtatttatttggatgtgacaggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaa |
4138525 |
T |
|
| Q |
217 |
atggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138524 |
atggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggt |
4138425 |
T |
|
| Q |
317 |
caggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccatgccaaagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4138424 |
caggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaatttagccatgccaaagaa |
4138325 |
T |
|
| Q |
417 |
tctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttg |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4138324 |
tctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttg |
4138273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 180 - 468
Target Start/End: Complemental strand, 4129845 - 4129557
Alignment:
| Q |
180 |
atataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctatt |
279 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129845 |
atataaccctgctgcagcaacatttggtcatgagaaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctatt |
4129746 |
T |
|
| Q |
280 |
gtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129745 |
gtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaa |
4129646 |
T |
|
| Q |
380 |
atagacaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttg |
468 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129645 |
atagacaccaagttcaaaatttagccatgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttg |
4129557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 145 - 465
Target Start/End: Complemental strand, 4118685 - 4118368
Alignment:
| Q |
145 |
atgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctatatcaaatg |
244 |
Q |
| |
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|||||||| |||||||| ||||| | ||||||||| |||| || |||||||||||||||| || | ||| ||||||| ||||||| |||| ||| |
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| T |
4118685 |
atgtactacaaaggtgtataccaccttttctaccaacataatccacttgcagcaacatttggtgat---ataattgtatgggctcattctgtatcctatg |
4118589 |
T |
|
| Q |
245 |
atctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactcccaggtga |
344 |
Q |
| |
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||||||| ||||||| |||||| || |||| ||| ||||| | |||| |||||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
4118588 |
atctcattaattggattcatctcaacattgctcttgaaccaagtggaccttatgacatcaatagttgttggtcaggttcagcaactatactcccaggtga |
4118489 |
T |
|
| Q |
345 |
aaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttaagggaatgg |
444 |
Q |
| |
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|||||||||||| ||||| |||||||||||||| ||| | ||||||| |||||||| || ||||||||||| | || ||| ||||||||||||| |
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| T |
4118488 |
aaaacctgctattttgtacacaggaattgatcactataagaatgaagttcagaacttagctataccaaagaatctaacagacgctttcttaagggaatgg |
4118389 |
T |
|
| Q |
445 |
gaaaaacatcctcaaaatcct |
465 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
4118388 |
gaaaaacaccctcaaaatcct |
4118368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 4143350 - 4143199
Alignment:
| Q |
137 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
236 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| |||||| | |||||||||||||||||||| || |
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| T |
4143350 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
4143251 |
T |
|
| Q |
237 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
288 |
Q |
| |
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||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| |
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| T |
4143250 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
4143199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 4130461 - 4130402
Alignment:
| Q |
126 |
tttggatgtgacaggaccaatgtactataaaggtgtttaccatttattctaccaatataa |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4130461 |
tttggctgtgacaggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 468
Target Start/End: Complemental strand, 4143097 - 4143013
Alignment:
| Q |
384 |
acaccaagttcaaaacttagccatgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttg |
468 |
Q |
| |
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||||||||||||| ||||||| ||||| ||| |||| || || ||| | |||| |||||| |||||| ||||||||||||||| |
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| T |
4143097 |
acaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttg |
4143013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 425
Target Start/End: Complemental strand, 42875826 - 42875709
Alignment:
| Q |
308 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaacttagccat |
407 |
Q |
| |
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||||||||||||| ||||| || ||||| ||||||| ||||| || || || || ||||||||||||| ||||| || |||||||||||| ||||||| |
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| T |
42875826 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttatacacaggaattgatccaaataatcatcaagttcaaaacatagccat |
42875727 |
T |
|
| Q |
408 |
gccaaagaatctgtctga |
425 |
Q |
| |
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|| || ||| ||||||| |
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| T |
42875726 |
acccaaaaatatgtctga |
42875709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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