View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19844_low_3 (Length: 390)
Name: NF19844_low_3
Description: NF19844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19844_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 48121087 - 48121455
Alignment:
| Q |
4 |
attatacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgcgcatgagcaccatataaattttattc |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48121087 |
attacacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgtgcatgagcaccatataaattttattc |
48121186 |
T |
|
| Q |
104 |
aatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaaggaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48121187 |
aatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaaggaca |
48121286 |
T |
|
| Q |
204 |
acactgcagctacagataccacatttgatccccaataaatatatttagtacatctctctaggccaggacaatagttgttgttaatatctacgaacatttt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48121287 |
acactgcagctacagataccacatttgatccccaataaatatatttagtacatctctctaggccaggacaatagttgttgttaatatctacgaacatttt |
48121386 |
T |
|
| Q |
304 |
tcgaacaaaagtacaatccattaaatcaaccaaaaatggtccatagtgatacaaaccatatgccacttc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48121387 |
tcgaacaaaagtacaatccattaaatcaaccaaaaatggtccatagtgatacaaaccatatgccacttc |
48121455 |
T |
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