View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19845_high_5 (Length: 344)
Name: NF19845_high_5
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19845_high_5 |
 | |
|
| [»] chr2 (17 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 30069891 - 30070224
Alignment:
| Q |
11 |
ttatactgagctgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatga |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30069891 |
ttattctgagctgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatga |
30069990 |
T |
|
| Q |
111 |
cgagtctgtcaagtttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtgga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
30069991 |
cgagtctgtcaagtttccatcaggtttcttgcaaaggtttatcaatctcgaaaaccttaagttgacatgtagttccttctcagagattttctcgagtgga |
30070090 |
T |
|
| Q |
211 |
agcgtttgcactggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgagg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
30070091 |
agcgtttgcactggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaaccttgagtttatatgtgatgtcaaatctgagg |
30070190 |
T |
|
| Q |
311 |
tgcaaccaattattcagaacatggaaactttggt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30070191 |
tgcaaccaattattcagaacatggaaactttggt |
30070224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 342
Target Start/End: Original strand, 30024785 - 30025102
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30024785 |
aaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30024884 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| ||| |||||| ||||||||||||||||| || | ||||| || ||||||||| ||| |||| |
|
|
| T |
30024885 |
ttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtggaagcaaatgcgctgg |
30024984 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30024985 |
acattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30025084 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30025085 |
caaaatattgaaactttg |
30025102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 30117337 - 30117020
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30117337 |
aaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30117238 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| ||| |||||| ||||||||||||||||| || | ||||| || ||||||||| ||| |||| |
|
|
| T |
30117237 |
ttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtggaagcaaatgcgctgg |
30117138 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30117137 |
acattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30117038 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30117037 |
caaaatattgaaactttg |
30117020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 30132094 - 30131777
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30132094 |
aaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30131995 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| ||| |||||| ||||||||||||||||| || | ||||| || ||||||||| ||| |||| |
|
|
| T |
30131994 |
ttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtggaagcaaatgcgctgg |
30131895 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30131894 |
acattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30131795 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30131794 |
caaaatattgaaactttg |
30131777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 30035912 - 30035595
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| ||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30035912 |
aaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30035813 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| || |||||| ||||||||||||||||| || | ||||| || |||||||||| ||| |||| |
|
|
| T |
30035812 |
ttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcgagtggaagcgaatgcgctgg |
30035713 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30035712 |
acattctgaaacaactatgaagttgagaattttagtacttgttcagttagataacctcgagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30035613 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30035612 |
caaaatattgaaactttg |
30035595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 30230050 - 30229733
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| ||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30230050 |
aaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30229951 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| || |||||| ||||||||||||||||| || | ||||| || |||||||||| ||| |||| |
|
|
| T |
30229950 |
ttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcgagtggaagcgaatgcgctgg |
30229851 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30229850 |
acattctgaaacaactatgaagttgagaattttagtacttgttcagttagataacctcgagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30229751 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30229750 |
caaaatattgaaactttg |
30229733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 30237343 - 30237026
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| ||| || | | ||||| |||| |||||||| ||||| ||| ||| ||| | |
|
|
| T |
30237343 |
aaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatgatgaggctgacaaat |
30237244 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||| | | |||| ||||||||||||||||| || | ||||| || |||||||||| ||| |||| |
|
|
| T |
30237243 |
ttccatctggtttcctccaaaagtttatcaatctcatagagcttattgtgacatgtagttccttcacatacattttctcgagtggaagcgaatgcgctgg |
30237144 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaaccaattatt |
324 |
Q |
| |
|
||||| | |||||| |||||||||||||| ||||||||| | | ||| | |||||| ||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
30237143 |
acattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctctagtttatatgtgaagagaaatctgaggtgcaatcagttatt |
30237044 |
T |
|
| Q |
325 |
cagaacatggaaactttg |
342 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
30237043 |
caaaatattgaaactttg |
30237026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 30253806 - 30254093
Alignment:
| Q |
25 |
aaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaagt |
124 |
Q |
| |
|
||||||||| | |||||| |||||||||||| ||| ||||| || ||| |||| ||| ||||| ||||||||||||||||| | ||||||| ||| | |
|
|
| T |
30253806 |
aaggatgtcacaatgttatgcaatggtcaacataacaatgagacaatctacacggtaaaagctcttcgcctacgatgttttcataatgagtctgacaaat |
30253905 |
T |
|
| Q |
125 |
ttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactgg |
224 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||| | || |||||||||||| || ||||||| |||||| | | || || || |
|
|
| T |
30253906 |
ttccatcaggtttcctccaaaggtttatcaatctcaaaaaccttaagataacttgtagttccttcacaaagatttt---cagtggatgtgcttccagcgg |
30254002 |
T |
|
| Q |
225 |
acattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaa |
315 |
Q |
| |
|
||||| | |||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||| ||||| |||||||||| |
|
|
| T |
30254003 |
acattctgaaacaattatgaagttgagaagtttagtgctcgttaacttacacaacctcaagtttatttgtgaagagaaatttgaggtgcaa |
30254093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 30792420 - 30792715
Alignment:
| Q |
22 |
tgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtca |
121 |
Q |
| |
|
|||||||| ||| |||||||| |||| |||||||||||||||||||| || ||| | || ||| ||||| |||||||||||||||||||| | ||| | |
|
|
| T |
30792420 |
tgcaaggacgtcaccatgttatgcaacggtcaacttaatgatgagctgatctacacagtaaaagctcttcgcctacgatgttttcatgacacgactgaaa |
30792519 |
T |
|
| Q |
122 |
agtttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcac |
221 |
Q |
| |
|
| |||||||| |||||| ||||||| |||||| | || ||| | |||||| || ||||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
30792520 |
aatttccatctggtttcctccaaagatttatccacctggaatatcttaaggtgtcatgtagttccttctcagagattttcttgagtggaagcatttgcac |
30792619 |
T |
|
| Q |
222 |
tggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaacc |
317 |
Q |
| |
|
|| ||||| | |||||| ||||||||||||||| ||||||| | ||| | ||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
30792620 |
tgaacattctgaaacaactatgaagttgagaagactagtacttgctggattaaaaaaccttgagtttatatgtaaagagaaatctgaggtgcaacc |
30792715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 30182467 - 30182173
Alignment:
| Q |
23 |
gcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtcaa |
122 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||||||||||||||| || | || | | |||||||| | ||||||||||| || | ||||| || |
|
|
| T |
30182467 |
gcaaggatgtcaccatggcatgcaatggtcaccttaatgatgagcttatcaacacagtaacagctctttgcttgcgatgttttcacgatgtgtctgaaaa |
30182368 |
T |
|
| Q |
123 |
gtttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcact |
222 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| || | || || ||| |||||||| ||||| |
|
|
| T |
30182367 |
gtttccatctggtttcctccaaaggttcatcaatctcaaaaaccttaaggtgacatgtagttccttcacatatatatttgcaaatggaagcgaatgcacc |
30182268 |
T |
|
| Q |
223 |
ggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgcaacc |
317 |
Q |
| |
|
|||||| | |||||| |||||||||| ||||||||| ||||| || ||||| |||||||| ||||||| ||||| ||||| |||||||||||| |
|
|
| T |
30182267 |
agacattctgaaacaattatgaagttgggaagtttagaactcattatgttacaaaacctcgaatttatatttgaagagaaatttgaggtgcaacc |
30182173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 30281374 - 30281666
Alignment:
| Q |
22 |
tgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtca |
121 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| |||||||||||| || ||| ||| |||||| ||||| || | |||||||||||||| || ||||||| |
|
|
| T |
30281374 |
tgcaaggatgtcaccatgttatgcagcggtgaacttaatgatgggcctatctacaaagtgaaagctcttcgcttgcgatgttttcatgatgaatctgtca |
30281473 |
T |
|
| Q |
122 |
agtttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcac |
221 |
Q |
| |
|
| ||| || | |||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||| || | || || || |||||||||| || || |
|
|
| T |
30281474 |
aattttcaactggtttccttcaaagatttatcaatctcaaaaaccttaaggtgacatgtagttccttcacatatatattttcgagtggaagcgaatggac |
30281573 |
T |
|
| Q |
222 |
tggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgca |
314 |
Q |
| |
|
|||||||| | |||||| |||||||||| |||||||| ||||| ||| ||||| |||||||| ||||||||||||| ||| | ||||||||| |
|
|
| T |
30281574 |
tggacattctgaaacaattatgaagttggaaagtttagaactcattaagttacaaaacctcgaatttatatgtgaagagaattttgaggtgca |
30281666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 30176676 - 30176968
Alignment:
| Q |
22 |
tgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttatttacgcggtgaaatctctttgcctacgatgttttcatgacgagtctgtca |
121 |
Q |
| |
|
|||||||||||| |||||||| | | |||||||||||| | ||| ||| ||| | |||||| ||||| | || |||||||||||||||||||||| | |
|
|
| T |
30176676 |
tgcaaggatgtcaccatgttatgtagcggtcaacttaataacgagtctatctacacagtgaaagctcttcgtctgcgatgttttcatgacgagtctgaga |
30176775 |
T |
|
| Q |
122 |
agtttccatcaggtttcttccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcac |
221 |
Q |
| |
|
|||||||| | |||||| ||||||| ||||||||||||||||| ||||| || | |||||||| ||| | |||||||| |||||||||||| || |||| |
|
|
| T |
30176776 |
agtttccaactggtttcctccaaagatttatcaatcttgaaaatcttaaagtgtcttgtagttctttcactgagattttctcaagtggaagctttggcac |
30176875 |
T |
|
| Q |
222 |
tggacattataaaacaagtatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtgaagtgaaatctgaggtgca |
314 |
Q |
| |
|
|| ||||| | ||| || ||||||||||||| ||||| | | | || | |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
30176876 |
tgaacattctgaaagaaagatgaagttgagaaaactagtaattgttgaactaaataacctcgagtttatatgtgaagagaaatctgagatgca |
30176968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 30031880 - 30032035
Alignment:
| Q |
140 |
tccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactggacattataaaacaag |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | |||| || ||||||||| |||| ||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
30031880 |
tccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtggaagctttgacactggacattcggaaacaac |
30031979 |
T |
|
| Q |
240 |
tatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtg |
295 |
Q |
| |
|
|||||||||| || ||||||| | | ||||| ||||| ||||||||||||| |
|
|
| T |
30031980 |
aatgaagttgaaaaagctagtacttgttgaattacataaccttgagtttatatgtg |
30032035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 30226018 - 30226173
Alignment:
| Q |
140 |
tccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactggacattataaaacaag |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | |||| || ||||||||| |||| ||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
30226018 |
tccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtggaagctttgacactggacattcggaaacaac |
30226117 |
T |
|
| Q |
240 |
tatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtg |
295 |
Q |
| |
|
|||||||||| || ||||||| | | ||||| ||||| ||||||||||||| |
|
|
| T |
30226118 |
aatgaagttgaaaaagctagtacttgttgaattacataaccttgagtttatatgtg |
30226173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 30092576 - 30092731
Alignment:
| Q |
140 |
tccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactggacattataaaacaag |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | |||| || ||||||||| |||| ||||| |||||||||||| || | |||||||| |||||| |
|
|
| T |
30092576 |
tccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtggaagctttgaccttggacattcggaaacaac |
30092675 |
T |
|
| Q |
240 |
tatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtg |
295 |
Q |
| |
|
|||||||||| || |||||||| | | ||||| ||||| ||||||||||||| |
|
|
| T |
30092676 |
aatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtg |
30092731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 30114429 - 30114584
Alignment:
| Q |
140 |
tccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactggacattataaaacaag |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | |||| || ||||||||| |||| ||||| |||||||||||| || | |||||||| |||||| |
|
|
| T |
30114429 |
tccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtggaagctttgaccttggacattcggaaacaac |
30114528 |
T |
|
| Q |
240 |
tatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtg |
295 |
Q |
| |
|
|||||||||| || |||||||| | | ||||| ||||| ||||||||||||| |
|
|
| T |
30114529 |
aatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtg |
30114584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 30129181 - 30129336
Alignment:
| Q |
140 |
tccaaaggtttatcaatcttgaaaaccttaagttgacatgtagttccttctcagagattttatcaagtggaagcgtttgcactggacattataaaacaag |
239 |
Q |
| |
|
||||||| ||||||||||||||||| |||| | |||| || ||||||||| |||| ||||| |||||||||||| || | |||||||| |||||| |
|
|
| T |
30129181 |
tccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtggaagctttgaccttggacattcggaaacaac |
30129280 |
T |
|
| Q |
240 |
tatgaagttgagaagtttagtactcagtaacttacacaacctcgagtttatatgtg |
295 |
Q |
| |
|
|||||||||| || |||||||| | | ||||| ||||| ||||||||||||| |
|
|
| T |
30129281 |
aatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtg |
30129336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University