View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19845_low_1 (Length: 519)
Name: NF19845_low_1
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19845_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 49509656 - 49509201
Alignment:
| Q |
18 |
caagcaatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttcaaagaaaggggatcagagccaacccaagagatt |
117 |
Q |
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| T |
49509656 |
caagcaatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttcaaagaaaggggatcagagccaacccaagagatt |
49509557 |
T |
|
| Q |
118 |
acttgtcattttattgccttggaaaccgagagggtaagaaaatgaatgaatatacttctacagaagcaccagaacctgacagtgattatagtagagcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509556 |
acttgtcattttattgccttggaaaccgagagggtaagaaaatgaatgaatatacttctacagaagcaccagaacctgacagtgattatagtagagcaca |
49509457 |
T |
|
| Q |
218 |
aaattctagaagattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacatatatatcatctgtttctatttacatttattagtgaca |
317 |
Q |
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| T |
49509456 |
aaattctagaagattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacataaatatcatctgtttctatttacatttattagtgaca |
49509357 |
T |
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| Q |
318 |
ctgctaactattttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgatcaaattcttaccattgaattgacactttccaat |
417 |
Q |
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| T |
49509356 |
ctgctaactattttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgatcaaattcttaccattgaattgacactttccaat |
49509257 |
T |
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| Q |
418 |
taattagcacatacgcctttgcaaaagaaaatttattaacacgttcttgtgattta |
473 |
Q |
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| T |
49509256 |
taattagcacatacgcctttgcaaaagaaaatttattaacacattcttgtgattta |
49509201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 49520799 - 49520551
Alignment:
| Q |
21 |
gcaatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttcaaagaaaggggatcagagccaacccaagagattact |
120 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||| | ||| ||| || ||| |||| | ||||| | |
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| T |
49520799 |
gcaatattagattggcaaagaaggaccatggagatgatgtatactgagattgctgatgccataaaaaagaagaacattgaagcacaccctcgtgattatt |
49520700 |
T |
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| Q |
121 |
tgtcattttattgccttggaaaccgagagggtaagaaa-atgaatgaatatacttctacagaagcaccagaacctgacagtgattatagtagagcacaaa |
219 |
Q |
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| T |
49520699 |
tgacattttattgtcttggtaaaagggagagtaagaaagatgga-gagtacactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaa |
49520601 |
T |
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| Q |
220 |
attctagaagattcatgatatatgttcatgccaaaatgatgataggtaag |
269 |
Q |
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| T |
49520600 |
agtctagaagattcatgatctatgttcattccaagatgatgataggtaag |
49520551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 2415934 - 2415896
Alignment:
| Q |
231 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
269 |
Q |
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| T |
2415934 |
ttcatgatatatgttcataccaagatgatgataggtaag |
2415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 44663124 - 44663162
Alignment:
| Q |
231 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
269 |
Q |
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|||||||| |||||||||||||| ||||||||||||||| |
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| T |
44663124 |
ttcatgatctatgttcatgccaagatgatgataggtaag |
44663162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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