View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19845_low_12 (Length: 227)
Name: NF19845_low_12
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19845_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 33777219 - 33777370
Alignment:
| Q |
4 |
acgagaaatcccgatagtgtatttttgacacaatttgctcccactttaattccttcttttgcggcatacatgctggtgctggcacatatataggctaaat |
103 |
Q |
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| T |
33777219 |
acgagaaatcccgatagtgtattttttacacaatttgctcccactttaattccttcttttgcggcatacatgctggtgctggcacatatattggctaaat |
33777318 |
T |
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| Q |
104 |
acacttatcgggatgatttgggacaaaaaactgtcgctatacttatcttttc |
155 |
Q |
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| T |
33777319 |
acacttctcgggatgatttgggacaaaaaactgtcgctatacttatcttttc |
33777370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 21186418 - 21186262
Alignment:
| Q |
4 |
acgagaaatcccgatagtgtatttttgacacaatttgctcccactttaattccttcttttgcggcatacatgctggtgctggcacatatataggctaaat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21186418 |
acgagaaatcccgatagtgtatttttgacacaatttgctcccactttaattccttcttttgcggcatacatgctggtgctggcacatgtataggctaaat |
21186319 |
T |
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| Q |
104 |
acacttatcgggatgatttgggacaaaaaactgtcgctatacttatcttttcacttaa |
161 |
Q |
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| T |
21186318 |
acacttctcgggatgattcgggac-aaaaactgtcgctatacttatcttttcccttaa |
21186262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 24314318 - 24314370
Alignment:
| Q |
158 |
ttaatttatatatgagcttaaacctaccgtaaattaaagacaagaagtgtaac |
210 |
Q |
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| T |
24314318 |
ttaatttatatatgagcttaaacctaccgtaaattaaagacaagaagtgtaac |
24314370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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