View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19845_low_6 (Length: 337)
Name: NF19845_low_6
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19845_low_6 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 37129 - 36823
Alignment:
| Q |
18 |
atttagtcattacgttgttattgcaatttgaagaatttgtagtttgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatgg |
117 |
Q |
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| T |
37129 |
atttagtcattacgttgttattgcaatttgaagaatttgtagtttgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatgg |
37030 |
T |
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| Q |
118 |
aatacaattgtttatttacacagttcggtcaagtgtgcctaagttgcgactacaaagcaacatagttccgtatgttactcgagtaaattagggtgttgca |
217 |
Q |
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| T |
37029 |
aacacaattgtttgtttacacagttcggtcaagtgtgcctaagttgcgactacaaagcaacatagttccgtatgttactcgagtaaattagggtgttgca |
36930 |
T |
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| Q |
218 |
atgcctatatataatagaacacccccagattactgtaatatcgtgaagcataccacagggggctatcgccacgttgcgctagcttaactccctcgttcct |
317 |
Q |
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| T |
36929 |
atgcctatatataatagaacgcccccagattactgtaatatcgtgaagcataccacagggggctatcgccacgttgcgctagcttaactccctcgttcct |
36830 |
T |
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| Q |
318 |
tgcccct |
324 |
Q |
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| T |
36829 |
tgcccct |
36823 |
T |
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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 17476285 - 17476211
Alignment:
| Q |
61 |
ttgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatggaatacaattgtttattta |
135 |
Q |
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| T |
17476285 |
ttgttaaaacaacaaccagtaaaagaagaataaagaaacgcaaatcgcaaacaatggaacacaattgtttgttta |
17476211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 33888359 - 33888435
Alignment:
| Q |
61 |
ttgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatggaatacaattgtttatttaca |
137 |
Q |
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| T |
33888359 |
ttgttagaacaataaccgctaaaagaagaataaagaaatgtaagtcacaaacaatgaaacacaatcgtttgtttaca |
33888435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 47252797 - 47252741
Alignment:
| Q |
74 |
aactagtaaaagaagaataaagaaatgcaaatcgaaaacaatggaatacaattgttt |
130 |
Q |
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| T |
47252797 |
aactagtaaaagaagaataaagaaacgtaaatcgcaaacaatagaacacagttgttt |
47252741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 31158928 - 31158874
Alignment:
| Q |
62 |
tgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatg |
116 |
Q |
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| T |
31158928 |
tgttagaacatcaactcgtaaaagaagaataaagaaacacaaatcgcaaacaatg |
31158874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 15065840 - 15065908
Alignment:
| Q |
62 |
tgttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatggaatacaattgttt |
130 |
Q |
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| T |
15065840 |
tgttagaacaacaactagtaaaagaaaactaaataaactcaaattgcaaacaatggaattcaatcgttt |
15065908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 44844724 - 44844757
Alignment:
| Q |
65 |
tagaacaataactagtaaaagaagaataaagaaa |
98 |
Q |
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| T |
44844724 |
tagaacaataactaggaaaagaagaataaagaaa |
44844757 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 29843981 - 29844038
Alignment:
| Q |
64 |
ttagaacaataactagtaaaagaagaataaagaaatgcaaatcgaaaacaatggaata |
121 |
Q |
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|||||| |||||||||||| | |||| ||||||||| |||||| ||||||||||||| |
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| T |
29843981 |
ttagaataataactagtaagaaaagattaaagaaattcaaatcacaaacaatggaata |
29844038 |
T |
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