View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19845_low_7 (Length: 336)
Name: NF19845_low_7
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19845_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 9336113 - 9335824
Alignment:
| Q |
24 |
accaaaatggtagaatgagtcaccaacatagatatttgaat---gtcttaaccattaatcgagggtagtgtgtatggaaaagtatttgttggaaaagtca |
120 |
Q |
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| T |
9336113 |
accaaaatgttagaatgagtcacca---tagatatttgagtactgttttaactattgatcgagggtagtgtgtatggaaaaatatttgttggagatgtca |
9336017 |
T |
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| Q |
121 |
caaatggttgtatatgtatcactactctataaaaaactataaaatgagaatcataccttctacccgttaagaaccaccactaaaagtcctctaatacaag |
220 |
Q |
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| T |
9336016 |
caaatggttgtacatgtatcactactctat--aaaactatataatgagaatcataccttctacctgttaagaaccaccact-------ctcttatacaag |
9335926 |
T |
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| Q |
221 |
ttcccttttagataaatgaaa---attttcagcnnnnnnncatgagcagagggaaatccttcaccggttatgcagaatcaatatcacttttatgcttcct |
317 |
Q |
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| T |
9335925 |
ttcccttttagataagtgagaattattttcagcaaaaaaacatgagcagagggaaatccttcacctgttatgaggaatcaatatcacttttaagcttcct |
9335826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 9363050 - 9362909
Alignment:
| Q |
15 |
acttgcaagaccaaaatggtagaatgagtcaccaacatagatatttgaatgtcttaaccattaatcgagggtagtgtgtatggaaaagtatttgttggaa |
114 |
Q |
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| T |
9363050 |
acttacaagacccaaatggtagaatgagtcaccaacatagatatttgagtgtcttaattattaatcgagggtagtgtgtatggaaaaatatttgttggag |
9362951 |
T |
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| Q |
115 |
aagtcacaaatggttgtatatgtatcactactctataaaaaa |
156 |
Q |
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| T |
9362950 |
aagtcacaaatggttgtacatatatcactactctataaaaaa |
9362909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 9359733 - 9359562
Alignment:
| Q |
151 |
aaaaaactataaaatgagaatcataccttctacccgttaagaaccaccactaaaagtcctctaatacaagttcccttttagataaatgaaa---attttc |
247 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
9359733 |
aaaaaactataaaatgagcatcataccttctacctgttaagaaccaccactaaaagtcctcttatacaagttcccttttagataagtgaaaattattttc |
9359634 |
T |
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| Q |
248 |
agcnnnnnnncatgagcagagggaaatccttcaccggttatgcagaatcaatatcacttttatgcttcctcc |
319 |
Q |
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| T |
9359633 |
agcaaaaaaacatgagcagagggaaatccttcacctgttatgaggaatcaatatcacttttaagcttcctcc |
9359562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 9244843 - 9244904
Alignment:
| Q |
258 |
catgagcagagggaaatccttcaccggttatgcagaatcaatatcacttttatgcttcctcc |
319 |
Q |
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| T |
9244843 |
catgagcagagggaaatccttctcctgttatgcggaatcaatatcacttttaagcttcctcc |
9244904 |
T |
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