View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19845_low_8 (Length: 331)

Name: NF19845_low_8
Description: NF19845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19845_low_8
NF19845_low_8
[»] chr5 (6 HSPs)
chr5 (1-163)||(5615333-5615495)
chr5 (195-278)||(1206318-1206401)
chr5 (9-151)||(26661474-26661617)
chr5 (9-151)||(26933067-26933210)
chr5 (15-99)||(28793176-28793260)
chr5 (31-151)||(13907594-13907715)
[»] chr3 (5 HSPs)
chr3 (1-163)||(21160620-21160782)
chr3 (228-306)||(30865206-30865284)
chr3 (229-308)||(39046734-39046813)
chr3 (229-308)||(38868786-38868865)
chr3 (16-66)||(31160940-31160990)
[»] chr8 (3 HSPs)
chr8 (9-151)||(28417558-28417701)
chr8 (17-151)||(33213609-33213744)
chr8 (28-94)||(42080483-42080549)
[»] chr2 (3 HSPs)
chr2 (15-151)||(40473080-40473217)
chr2 (22-150)||(32076943-32077072)
chr2 (37-151)||(43864732-43864847)
[»] chr6 (9 HSPs)
chr6 (9-151)||(34433549-34433692)
chr6 (228-308)||(3045679-3045759)
chr6 (29-152)||(1369668-1369792)
chr6 (31-70)||(16436503-16436542)
chr6 (229-308)||(33468651-33468730)
chr6 (231-305)||(34604075-34604149)
chr6 (231-305)||(34725352-34725426)
chr6 (14-47)||(16325636-16325669)
chr6 (14-47)||(16349034-16349067)
[»] chr7 (3 HSPs)
chr7 (15-151)||(29738796-29738933)
chr7 (9-151)||(41210110-41210253)
chr7 (16-66)||(39970013-39970063)
[»] chr1 (3 HSPs)
chr1 (9-151)||(44312811-44312954)
chr1 (14-151)||(13165059-13165197)
chr1 (37-151)||(42474433-42474548)
[»] chr4 (2 HSPs)
chr4 (31-109)||(25141438-25141517)
chr4 (19-48)||(34214735-34214764)
[»] scaffold0019 (1 HSPs)
scaffold0019 (34-94)||(73393-73453)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 5615495 - 5615333
Alignment:
Q  1 ttctttcgaacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtcattat 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||  ||| ||||||||||| ||||||||||||    
T  5615495 ttctttcaaacttcagggtagagttcactaggcgacaaacaaatgcagttgctcatacacttacagaagaagctaaatttctaactagtcccgtcattat 5615396  T
Q  101 tatcatatctcatcagatatagcaactattgttataaatgaaatgcaatgatgcttctttcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615395 tatcatatctcatcagatatagcaactattgttataaatgaaatgcaatgatgcttctttcac 5615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 1206318 - 1206401
Alignment:
Q  195 aaccagaatgatgagcttgttgttgattatccgctggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatccta 278  Q
    ||||||||| |||| ||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  1206318 aaccagaatcatgatcttgttgttcatcatccgctggaattggcagtctgatgtgataacgcttcatgtaggcgttgaatccta 1206401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 26661474 - 26661617
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    ||||||||||||||||| ||||| | |||| ||||| |||| |||||| |  ||||||||||||||||||||||||||| |||||||| |||||| ||||    
T  26661474 aacttcagggtagagtttactagacaacaaacaaatacagtcgctcatccgtttgcaggagagactacatttctaactagtcccgtcatttattaacata 26661573  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    |||||||   ||| | ||||||| |||| || ||||||||||||    
T  26661574 tctcatcttttattgaaactattattattaaagaaatgcaatga 26661617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 26933067 - 26933210
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    ||||||||||||||||| ||||| | |||| ||||| |||| |||||| |  ||||||||||||||||||||||||||| |||||||| |||||| ||||    
T  26933067 aacttcagggtagagtttactagacaacaaacaaatacagtcgctcatccgtttgcaggagagactacatttctaactagtcccgtcatttattaacata 26933166  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    |||||||   ||| | ||||||| |||| || ||||||||||||    
T  26933167 tctcatcttttattgaaactattattattaaagaaatgcaatga 26933210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 28793176 - 28793260
Alignment:
Q  15 agggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtcatta 99  Q
    ||||| ||||||||||| |||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||| |||||| ||||    
T  28793176 agggtggagttcactagacgacaaacaaattcagttgctcatgcgcttgcatgagagactacatttctaactagtcccgttatta 28793260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 13907715 - 13907594
Alignment:
Q  31 ggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcatcagatatagcaactat 129  Q
    ||||||||||||||||||  |||||| |  ||||| ||||| ||||||||||| ||| |||||||| ||||||||||||| | ||   ||| | ||| ||    
T  13907715 ggcgacaagcaaatgcagcagctcatgcgtttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcccttcttgtattgaaacaat 13907616  T
Q  130 tgttataaatgaaatgcaatga 151  Q
    | ||||||||||||||||||||    
T  13907615 tattataaatgaaatgcaatga 13907594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 21160782 - 21160620
Alignment:
Q  1 ttctttcgaacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtcattat 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||  ||| ||||||||||| ||||||||||||    
T  21160782 ttctttcaaacttcagggtagagttcactaggcgacaaacaaatgcagttgctcatacacttacagaagaagctaaatttctaactagtcccgtcattat 21160683  T
Q  101 tatcatatctcatcagatatagcaactattgttataaatgaaatgcaatgatgcttctttcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21160682 tatcatatctcatcagatatagcaactattgttataaatgaaatgcaatgatgcttctttcac 21160620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 30865206 - 30865284
Alignment:
Q  228 ctggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagtac 306  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||| || ||||| |||||    
T  30865206 ctgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtac 30865284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 39046813 - 39046734
Alignment:
Q  229 tggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagtacct 308  Q
    ||||||||| ||||||||   || |||||||||||||| |||||||||||  |||||||| |||||||||  ||||||||    
T  39046813 tggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatattaaatgattatgccctagaagtacct 39046734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 38868786 - 38868865
Alignment:
Q  229 tggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagtacct 308  Q
    ||||||||| |||||||| ||||||||| ||||||||  ||||||||| |  |||||||   ||||||||||||| ||||    
T  38868786 tggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacct 38868865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 31160940 - 31160990
Alignment:
Q  16 gggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcag 66  Q
    |||| |||||||||||| ||||||||||||  ||||||||| |||||||||    
T  31160940 gggttgagttcactaggtgacaagcaaatgtggttgctcatgcacttgcag 31160990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 28417558 - 28417701
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    |||||||||  |||||||||||||||||||||||||||||  |||||| | |||||| ||||| ||||||||||| ||| |||||||| |||||||||||    
T  28417558 aacttcaggacagagttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagaggctacatttctagctagtcccgtcatttattatcata 28417657  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    || | ||  |||| | ||| ||| ||||||||||||||||||||    
T  28417658 tcccttcttatattgaaacaattattataaatgaaatgcaatga 28417701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 33213609 - 33213744
Alignment:
Q  17 ggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcatca 115  Q
    ||||||||||||||||||||||||||||||||  ||||||   |||||| ||||||||||||||||| ||| |||||||| ||||||||||||| | ||     
T  33213609 ggtagagttcactaggcgacaagcaaatgcagcagctcatttgcttgcaagagagactacatttctagctagtcccgtcatttattatcatatcccttct 33213708  T
Q  116 gatatagcaactattgttataaatgaaatgcaatga 151  Q
      ||| | ||| ||| ||||||||||||||||||||    
T  33213709 tgtattgaaacaattattataaatgaaatgcaatga 33213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 42080483 - 42080549
Alignment:
Q  28 ctaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgt 94  Q
    ||||| ||||||||||||   |||||||||| |||||||||||||| |||||| || | ||||||||    
T  42080483 ctaggagacaagcaaatgtgattgctcatactcttgcaggagagaccacatttgtagccaatcccgt 42080549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 40473080 - 40473217
Alignment:
Q  15 agggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcat 113  Q
    |||||||||||||||||| |||||||||||||||  |||||| | |||||| ||||| ||||||||||| ||| |||||||| ||||||||||||| | |    
T  40473080 agggtagagttcactaggtgacaagcaaatgcagcagctcatgcgcttgcaagagaggctacatttctagctagtcccgtcatttattatcatatcactt 40473179  T
Q  114 cagatatagcaactattgttataaatgaaatgcaatga 151  Q
    |   ||| | ||| ||| ||||||||||||||||||||    
T  40473180 cttgtattgaaacaattattataaatgaaatgcaatga 40473217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 32077072 - 32076943
Alignment:
Q  22 agttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcatcagatat 120  Q
    |||||||||||||||||||||||||||  |||||| | |||||| ||||| ||||||||||| ||| ||| |||| ||||||||||||| | ||   |||    
T  32077072 agttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagagcctacatttctagctagtccggtcatttattatcatatcccttcttgtat 32076973  T
Q  121 agcaactattgttataaatgaaatgcaatg 150  Q
     | ||| ||| || ||||||||||||||||    
T  32076972 tgaaacaattattgtaaatgaaatgcaatg 32076943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 43864732 - 43864847
Alignment:
Q  37 aagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcatcagatatagcaactattgttat 135  Q
    ||||||||||||  |||||| | ||||||| |||||| |||||||||||||||||||| | ||||| || |||||||||   ||| | | ||||| ||||    
T  43864732 aagcaaatgcagccgctcatgcgcttgcagaagagacaacatttctaactaatcccgttacttattttcgtatctcatcttgtattgaatctattattat 43864831  T
Q  136 aaatgaaatgcaatga 151  Q
    ||||||||||| ||||    
T  43864832 aaatgaaatgcgatga 43864847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 34433549 - 34433692
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    |||| ||||||||||||||||| || ||||||||||||||  |||||| | ||| || ||||| ||||||||||||||| |||||||| |||||||||||    
T  34433549 aactccagggtagagttcactatgcaacaagcaaatgcagcagctcatgcgcttacaagagaggctacatttctaactagtcccgtcatttattatcata 34433648  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    || | ||   ||| | ||| ||| ||||||||||||||||||||    
T  34433649 tcccttcttgtattgaaacaattattataaatgaaatgcaatga 34433692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 3045759 - 3045679
Alignment:
Q  228 ctggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagtacct 308  Q
    |||||||||| |||||||| ||| |||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||    
T  3045759 ctggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacct 3045679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 1369668 - 1369792
Alignment:
Q  29 taggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccg-tcattattatcatatctcatcagatatagcaact 127  Q
    |||||||||||||||||||| |||||||    |||||||||||||||| |||||||||| | | | |  ||||||||||||||||||   ||| | ||||    
T  1369668 taggcgacaagcaaatgcagctgctcatgtgtttgcaggagagactacgtttctaactagttctgctatttattatcatatctcatcttgtattgaaact 1369767  T
Q  128 attgttataaatgaaatgcaatgat 152  Q
    ||| |||| |||||||| |||||||    
T  1369768 attattattaatgaaatacaatgat 1369792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 16436503 - 16436542
Alignment:
Q  31 ggcgacaagcaaatgcagttgctcatacacttgcaggaga 70  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  16436503 ggcgacaagcaaatgcagttgctcatgcccttgcaggaga 16436542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 33468651 - 33468730
Alignment:
Q  229 tggaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagtacct 308  Q
    ||||||||  ||| |||| ||||||||||||||||||  ||||||||| |  || ||||| ||||||| |||||||||||    
T  33468651 tggaattgaaagtgtgatacgataatgcttcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacct 33468730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 34604149 - 34604075
Alignment:
Q  231 gaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagta 305  Q
    ||||||| ||| |||| |||  || ||||||||||||||||||||| |  |||||| | ||||||||||||||||    
T  34604149 gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagta 34604075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 34725426 - 34725352
Alignment:
Q  231 gaattggcagtctgatgcgataatgcttcatgtaggcgttgaatcctacgattaaatgtttatgccctttaagta 305  Q
    ||||||| ||| |||| |||  || ||||||||||||||||||||| |  |||||| | ||||||||||||||||    
T  34725426 gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagta 34725352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 16325636 - 16325669
Alignment:
Q  14 cagggtagagttcactaggcgacaagcaaatgca 47  Q
    |||| |||||||||||||||||||||||||||||    
T  16325636 caggatagagttcactaggcgacaagcaaatgca 16325669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 16349034 - 16349067
Alignment:
Q  14 cagggtagagttcactaggcgacaagcaaatgca 47  Q
    |||| |||||||||||||||||||||||||||||    
T  16349034 caggatagagttcactaggcgacaagcaaatgca 16349067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 29738796 - 29738933
Alignment:
Q  15 agggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcat 113  Q
    |||||||||||||||||||||| |||||||| ||| ||| || | |||| | ||||| ||||||||||| ||| |||||||| ||||||||||||| | |    
T  29738796 agggtagagttcactaggcgactagcaaatgtagtagcttatgcgcttgtaagagaggctacatttctagctagtcccgtcatttattatcatatccctt 29738895  T
Q  114 cagatatagcaactattgttataaatgaaatgcaatga 151  Q
    |   ||| ||||| ||| ||||||||||||||||||||    
T  29738896 cttgtattgcaacaattattataaatgaaatgcaatga 29738933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 41210110 - 41210253
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    |||| |||||||||||||||||||||||||||||||||||  |||||| | ||| || ||||  ||| |||||||  || |||||||| ||||||||| |    
T  41210110 aactccagggtagagttcactaggcgacaagcaaatgcagcagctcatgcgctttcaagagatgctatatttctagttagtcccgtcatttattatcaaa 41210209  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    || | ||   ||| | ||| ||| ||||||||||||||||||||    
T  41210210 tcccttcttgtattgaaacaattattataaatgaaatgcaatga 41210253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 39970013 - 39970063
Alignment:
Q  16 gggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcag 66  Q
    |||| ||||| |||||||||||||||||||  |||||||| ||||||||||    
T  39970013 gggttgagtttactaggcgacaagcaaatgaggttgctcacacacttgcag 39970063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 44312954 - 44312811
Alignment:
Q  9 aacttcagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcata 107  Q
    |||| |||||||  ||||||||||||||||||||||||||  |||||| | |||||| ||||  ||||||||||| ||| |||||||| |||||||||||    
T  44312954 aactccagggtaaggttcactaggcgacaagcaaatgcagcagctcatgcgcttgcaagagaagctacatttctagctagtcccgtcatttattatcata 44312855  T
Q  108 tctcatcagatatagcaactattgttataaatgaaatgcaatga 151  Q
    || | ||   ||| | ||| ||| ||||||||||||||||||||    
T  44312854 tcccttcttgtattgaaacaattattataaatgaaatgcaatga 44312811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 13165197 - 13165059
Alignment:
Q  14 cagggtagagttcactaggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctca 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||    |||||  |||| |||||||| ||  || |||||||| |||||||| |||||||    
T  13165197 cagggtagagttcactaggcgacaagaaaatgcagttgctcatgagtttgcaaaagaggctacatttatagttagtcccgtcatttattatcgtatctca 13165098  T
Q  113 tcagatatagcaactattgttataaatgaaatgcaatga 151  Q
     |   ||    ||||||| ||||||||||||||||||||    
T  13165097 ccttgtactcaaactattattataaatgaaatgcaatga 13165059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 42474548 - 42474433
Alignment:
Q  37 aagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatctcatcagatatagcaactattgttat 135  Q
    ||||||||| || ||||||| | ||||||||||||||||||||||||  || || | | | ||||||||||||| ||||   ||| | || |||| ||||    
T  42474548 aagcaaatgtagctgctcatgcgcttgcaggagagactacatttctagatagtctcattatttattatcatatcccatcttgtattgaaaatattattat 42474449  T
Q  136 aaatgaaatgcaatga 151  Q
    ||||||||||||||||    
T  42474448 aaatgaaatgcaatga 42474433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 25141438 - 25141517
Alignment:
Q  31 ggcgacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgtca-ttattatcatatc 109  Q
    |||||||||||||||||| ||||||| | ||||||| |||| | ||||||||| ||| |||| | | |||||||||||||    
T  25141438 ggcgacaagcaaatgcagctgctcatgcccttgcagaagaggcgacatttctagctagtcccattatttattatcatatc 25141517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 34214764 - 34214735
Alignment:
Q  19 tagagttcactaggcgacaagcaaatgcag 48  Q
    ||||||||||||||||||||||||||||||    
T  34214764 tagagttcactaggcgacaagcaaatgcag 34214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 73453 - 73393
Alignment:
Q  34 gacaagcaaatgcagttgctcatacacttgcaggagagactacatttctaactaatcccgt 94  Q
    ||||||||||||  |||||| ||||||| ||||||||||| || |||||| ||| ||||||    
T  73453 gacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgt 73393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University