View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19846_low_2 (Length: 462)
Name: NF19846_low_2
Description: NF19846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19846_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 8712177 - 8711748
Alignment:
| Q |
16 |
tattctcatgttaagctcaaactaagagggaatgttttggggatctgaatgacatcatcaactcagctgagaaaaagggaggaaatacaaggaatccaaa |
115 |
Q |
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| T |
8712177 |
tattctcatattaagctcaaactaagagggaatgttttggggatctaaatgacatcatcaactcagctgagaaaaagggaggaaatacaaggaatccaaa |
8712078 |
T |
|
| Q |
116 |
ccaacttatgttggggaggaatactttggatatttgtagtcttattgatttaggctttgaaggacatcctttcacttggacaattaagagggaacttgaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8712077 |
ccaacttatgttggggaggaatactttggatatttgtagtcttattgatttgggctttgaaggacatcctttcacttggacaaataagagggaacttgaa |
8711978 |
T |
|
| Q |
216 |
gaaaatattcaatgcagactggatagagcggttgctacagagaagttcatcaataggttctctcccatcagagtcctccatcttccaaggtatggttctg |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8711977 |
gaaaatattcaatgcagactggacagagcggttgctacagaggagttcatcaataggttctctcccatcagagtcctccatcttccaaggtatggttatg |
8711878 |
T |
|
| Q |
316 |
atcatgctcctattttgattgaattacaagctgtttctttgcggagtcgaaagaaaaggacccgtatttttcattttgaggaggcctggacaaaagaggt |
415 |
Q |
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| T |
8711877 |
atcatgttcctattttgattgaattacaagctgtttctttgcggagtcgaaagaaaaggacccgtatttttcgttttgaggaggcctggacaaaagaggt |
8711778 |
T |
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| Q |
416 |
gaattcagaggatgttattcgtaatacatg |
445 |
Q |
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| T |
8711777 |
gaattcagaggatgttattcgtaatacatg |
8711748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 47 - 445
Target Start/End: Complemental strand, 20927106 - 20926708
Alignment:
| Q |
47 |
atgttttggggatctgaatgacatcatcaactcagctgagaaaaagggaggaaatacaaggaatccaaaccaacttatgttggggaggaatactttggat |
146 |
Q |
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| T |
20927106 |
atgttttggggacctgaatgacatcatcaactcaactgagaaaatgggaggaaatataaggaatccaaaccaacttatgttggggaggaatactttggat |
20927007 |
T |
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| Q |
147 |
atttgtagtcttattgatttaggctttgaaggacatcctttcacttggacaattaagagggaacttgaagaaaatattcaatgcagactggatagagcgg |
246 |
Q |
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| T |
20927006 |
atttgtagtcatattgatttgggttttgaaggacatcctttcacttggacaaataagagggaatttgaagaaaatattcaatacagactggacagagcgg |
20926907 |
T |
|
| Q |
247 |
ttgctacagagaagttcatcaataggttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattacaagc |
346 |
Q |
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| T |
20926906 |
ttgctacagaagagttcatcaataggttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattagaagt |
20926807 |
T |
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| Q |
347 |
tgtttctttgcggagtcgaaagaaaaggacccgtatttttcattttgaggaggcctggacaaaagaggtgaattcagaggatgttattcgtaatacatg |
445 |
Q |
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| T |
20926806 |
tgtttctttgcggagtcgaaagaaaaggacccgtattttttgttttgaggaggcctgaacaaaagagatgaatttagaggatgttattcgtaatacatg |
20926708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 51 - 440
Target Start/End: Original strand, 40047337 - 40047726
Alignment:
| Q |
51 |
tttggggatctgaatgacatcatcaactcagctgagaaaaagggaggaaatacaaggaatccaaaccaacttatgttggggaggaatactttggatattt |
150 |
Q |
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||||| || |||||||| || ||||||||||||||||| | ||||| || || |||| | ||||||| |||||| ||||||| ||||| |||||||| | |
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| T |
40047337 |
tttggtgacctgaatgatatgatcaactcagctgagaagataggaggcaacactaggagttcaaaccagcttatgctggggagaaataccttggatatct |
40047436 |
T |
|
| Q |
151 |
gtagtcttattgatttaggctttgaaggacatcctttcacttggacaattaagagggaacttgaagaaaatattcaatgcagactggatagagcggttgc |
250 |
Q |
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| || || |||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||| |||| |||||||| || || |
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| T |
40047437 |
gcagactgattgatttgggctttgaaggacatccgttcacttggacaaataagagggagcttgaggaaaatattcaatgttgactagatagagctgtggc |
40047536 |
T |
|
| Q |
251 |
tacagagaagttcatcaataggttctctcccatcagagtcctccatcttccaaggtatggttctgatcatgctcctattttgattgaattacaagctgtt |
350 |
Q |
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| T |
40047537 |
atcagaagagttcatcagtagattcgctcccatcagagttctccaccttcccaggtatggttctgatcatgctcctattctaattgatctagaatctgat |
40047636 |
T |
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| Q |
351 |
tctttgcggagtcgaaagaaaaggacccgtatttttcattttgaggaggcctggacaaaagaggtgaattcagaggatgttattcgtaat |
440 |
Q |
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| T |
40047637 |
tttatgagtgcccataagaaaaggatccgaatgttccgttttgaggaggcctggacgaaagaggtaaactctgaggacattattcgtaat |
40047726 |
T |
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