View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19846_low_3 (Length: 358)
Name: NF19846_low_3
Description: NF19846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19846_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 40406636 - 40406284
Alignment:
| Q |
1 |
tcttcactttccgtgacctctctcctcctccctccgcttctttcaaccgctcttatcccgtcactacccctaacgaatacagtctcttcttcgctaattg |
100 |
Q |
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| T |
40406636 |
tcttcactttccgtgacctctctcctcctccctccgcttctttcaaccgctcttatcccgtcactacccctaacgaatacagtctcttcttcgctaattg |
40406537 |
T |
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| Q |
101 |
cgctcctgaaacctctgtttccatgttcgttcgcaccgagattttcaatctcgatgcagacggttctaaagactatctctccgctggacaaactcaactc |
200 |
Q |
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| T |
40406536 |
cgctcctgaaacctctgtttccatgtttgttctcaccgagattttcaatctcgatgcagacggttctaaagactatctctccgctggacaaactcaactc |
40406437 |
T |
|
| Q |
201 |
ccttctctctttttcctcttcttccttgcttacttaactttctttgtattttggatatacacttgttacaccaataaacgttctattcaccgcattcatc |
300 |
Q |
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| T |
40406436 |
ccttctctctttttcctcttcttccttgcttacttaactttctttgtattttggatatacacttgttacaccaataaacgttctattcaccgcattcatc |
40406337 |
T |
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| Q |
301 |
ttcttatggcggttttgcttatcatgaaggctttgaatcttatctgtgctgct |
353 |
Q |
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| T |
40406336 |
ttcttatggcggttttgcttatcatgaaggctttgaatcttatttgtgctgct |
40406284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 29027258 - 29027181
Alignment:
| Q |
80 |
cagtctcttcttcgctaattgcgctcctgaaacctctgtttccatgttcgttcgcaccgagattttcaatctcgatgc |
157 |
Q |
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| T |
29027258 |
cagtctcttcttcgctaactgtgcaccggaaacctccgtttccatggcggttcggactgagcttttcaacctcgatgc |
29027181 |
T |
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