View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19847_high_4 (Length: 232)
Name: NF19847_high_4
Description: NF19847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19847_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 44768167 - 44768352
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaacacaccccaaaaactaaag |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44768167 |
caaaggtgtcgtatatatgcggaacacatagcaaagttgaaacaccaaaatccgtatatatgaggaacctctgccca-------------aaaactaaag |
44768253 |
T |
|
| Q |
115 |
cctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaacctgannnnnnnaaacctgcacagaacagcaataacagctccccact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44768254 |
cctaaagcggcacaagcacaccctatcagcaagcaaagaaagcacagaaaaaccagacccccccaaacctgcagagaacagcaataacagctccccact |
44768352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10681883 - 10681962
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa |
93 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||||||| | |||||| |
|
|
| T |
10681883 |
caaaggtgtcgtatatatgcggaacacctaacaaggtaggaacaccaaaaatccatatatatgaggaacctttacccaaa |
10681962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10537193 - 10537272
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacacc-aaaatccgtatatatgaggaacctctgcccaaa |
93 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
10537193 |
caaaggtgccgtatatatgcggaacacataacaaggtaggaacaccaaaaatccatatatatgaggagcctctacccaaa |
10537272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 8961059 - 8960979
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa |
95 |
Q |
| |
|
|||||||| || | ||||||||||||| || ||| || |||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
8961059 |
caaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatctttatatatgcggaacctctacccaaaaa |
8960979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 3298908 - 3298829
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa |
95 |
Q |
| |
|
|||||||| || | ||||||||||||| || ||| || ||||||||||||| | |||||||| ||||||||| |||||||| |
|
|
| T |
3298908 |
caaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaat-cttatatatgtggaacctctacccaaaaa |
3298829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 1993551 - 1993471
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa |
95 |
Q |
| |
|
|||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
1993551 |
caaaggtgccggaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgtggaacctctacccaaaaa |
1993471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 9404743 - 9404823
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa |
95 |
Q |
| |
|
|||||||| || | ||||||||||||| || ||| || ||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
9404743 |
caaaggtgccgaaaatatgcggaacacctaacaatgtaggaacaccaaaatccttatatatgcggaacctctacccaaaaa |
9404823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 44613936 - 44613856
Alignment:
| Q |
15 |
caaaggtgtcgtatatatgcggaacacgtagcaaagttggaacaccaaaatccgtatatatgaggaacctctgcccaaaaa |
95 |
Q |
| |
|
|||||||| || | ||||||||||||| || ||| || | |||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
44613936 |
caaaggtgccggaaatatgcggaacacctaacaatgtagtcacaccaaaatccttatatatgtggaacctctacccaaaaa |
44613856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University