View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19847_high_5 (Length: 205)
Name: NF19847_high_5
Description: NF19847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19847_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43064010 - 43063806
Alignment:
| Q |
1 |
ccctcatcaatttgttgtaaatagatcatttacaatcaatgagcaaaaatcattttgttcataattt-ctctatatggtattaagcgcatcattttatgc |
99 |
Q |
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| T |
43064010 |
ccctcatcaatttgttgtaaatagatcatttacaatcaatgagcaaaaatcattttgttcataattttctctatatggtattaagcgcatcattttatgc |
43063911 |
T |
|
| Q |
100 |
ttccacattcatgcctttttgttaatcaaatccttccaccatggaactaagatgattttaagttcgattcttggggacaatgtaacagcttggtgttatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
43063910 |
ttccacattcatgcctttttgttaatcaaatccttccaccatggaactaagatgatgttaagttcgattcttgggaacaatgtaacagcttggtggtatc |
43063811 |
T |
|
| Q |
200 |
ttgga |
204 |
Q |
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||||| |
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| T |
43063810 |
ttgga |
43063806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 43182324 - 43182510
Alignment:
| Q |
14 |
gttgtaaatagatcatttacaatcaatgagcaaaaatcattttgttcataattt-ctctatatggtattaa-------gcgcatcattttatgc----tt |
101 |
Q |
| |
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||||||| ||||||||||||||||||||| | || ||||| | ||||| |||| ||||||||||||||| |||||||||||||||| || |
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| T |
43182324 |
gttgtaactagatcatttacaatcaatgaactcaattcattctattcatcattttctctatatggtattagccattaggcgcatcattttatgcatgctt |
43182423 |
T |
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| Q |
102 |
ccacattcatgcctttttgttaatcaaatccttccaccatggaactaagatgattttaagttcgattcttggggacaatgtaacagc |
188 |
Q |
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||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |||| || |||||||||| |
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| T |
43182424 |
ccacattcaagcctttttgttaatcaaatccttcaaccatgtaactaagatgatgttaagttcgatttatgggaacgatgtaacagc |
43182510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 43180194 - 43180295
Alignment:
| Q |
71 |
tatatggtattaagcgcatcattttatgcttccacattcatgcctttttgttaatcaaatccttccaccatggaactaagatgattttaagttcgattct |
170 |
Q |
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||||||||||| ||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| ||||| |
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| T |
43180194 |
tatatggtattcggcgcatcatttcacacttctgcattcatgcctttctgttaatcaaatccttccaccatggagctaagatgatgttaagttcaattct |
43180293 |
T |
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| Q |
171 |
tg |
172 |
Q |
| |
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|| |
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|
| T |
43180294 |
tg |
43180295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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