View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19847_low_1 (Length: 606)
Name: NF19847_low_1
Description: NF19847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19847_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 596
Target Start/End: Original strand, 49764319 - 49764898
Alignment:
| Q |
17 |
atgcacaatgtgcctatagttagggggagagggcgagaagaaagggtcgtcgtgggaagacgtgaactggagcagttccgctttcctctagggtaannnn |
116 |
Q |
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| T |
49764319 |
atgcacaatgtgcctatagtcagggggagagggcgagaagaaagggtcgtcgtgggaagacgtgaattggagtagttccgctttcctctagggtaacccc |
49764418 |
T |
|
| Q |
117 |
nnnataaataccaaacctacgctcccaaagaggagatgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagct |
216 |
Q |
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| T |
49764419 |
cccataaataccaaacctacgctcccaaagaggagatgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagct |
49764518 |
T |
|
| Q |
217 |
attgtactcggttcaagtacaagaagttgggaggagcatggaggattttctcccaattactcatacactagagtggttattgcctgaattggtctctact |
316 |
Q |
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| T |
49764519 |
attgtactcggttcaagtacaagaagttgggaggagcatggaggattttctcccaattactcatacactagagtggttatttcctgaattggtctctact |
49764618 |
T |
|
| Q |
317 |
ctctacattgtttttattcctccttgtattgccgaatttattgagtgttatgattttatttggtcaaaaattaagtattgataacccaactcctactaca |
416 |
Q |
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| T |
49764619 |
ctctacattgtttttattcctccttgtattgccgaatttattgagtgttatgattttatttggtcaaaaattaagtattgataacccaactcctactaca |
49764718 |
T |
|
| Q |
417 |
ttgaatagtaatagtaagtttataaagagggaaaccctttaatttacaaattgataacccaattcctacattgaatagtgacaattttctctatttagat |
516 |
Q |
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| T |
49764719 |
ttgaatagtgatagtaagtttataaagagggaaaccctttattttacaaattgataacccaattcctacattgaatagtgacaattttctctatttagat |
49764818 |
T |
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| Q |
517 |
atccctcagagctgatgcatacaccaacaataggggatccaaacacttttattttgatgaattttcttaggctgatgatg |
596 |
Q |
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| T |
49764819 |
atccctcagagctgatgcatacaccaacaataagggatccaaacacttttattttgatgaattttcttaggctgatgatg |
49764898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 21272482 - 21272568
Alignment:
| Q |
152 |
atgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtacaa |
238 |
Q |
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| T |
21272482 |
atgacctatattcacaacctattactctgactctgaaaaagcacattgttaatagggttagagctattgtactcaattcaaatacaa |
21272568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 10325413 - 10325329
Alignment:
| Q |
153 |
tgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtaca |
237 |
Q |
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| T |
10325413 |
tgacctaaattcactacctatcactctgactctgaaaaagcacaccgcagtcagggttagagctattatacttcgttcaagtaca |
10325329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 1622507 - 1622554
Alignment:
| Q |
176 |
ctctgactctcgaaaagcacactgctactagggttagagctattgtac |
223 |
Q |
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| T |
1622507 |
ctctgactctagaaaagcacactgctgctagggttggaactattgtac |
1622554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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