View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19847_low_9 (Length: 202)
Name: NF19847_low_9
Description: NF19847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19847_low_9 |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 39046014 - 39045841
Alignment:
| Q |
14 |
aaaattatatgttattcaacgagtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaa |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39046014 |
aaaattatatgttattcaacgggtgaagaagatcatttgtagaattgaaaattgatcttctaagttgttatcttatgctggtagcttacaacttatcaaa |
39045915 |
T |
|
| Q |
114 |
attgtcttgtttggtgttcaaccttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39045914 |
attgtcttgtttggtgttcaaccttattggagtcaggtttttgtgcttccttagaaagttataaaacttattca |
39045841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 41100398 - 41100247
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
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||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
41100398 |
gtgaagaggatcatttgtagaatcgaaaattggtcttctaagttgttatcgtatgctagtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
41100299 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
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|||||||||||||||||||||| |||||| |||| ||| ||||||||||||| |
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| T |
41100298 |
cttattggagtcaggtttttgtacttcctcagaaggttctaaaacttattca |
41100247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 7279432 - 7279563
Alignment:
| Q |
56 |
aattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaaccttattggagtcaggttttt |
155 |
Q |
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|||||||||||||||||| ||||||||||| |||||| | || ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
7279432 |
aattgaaaattggtcttccaagttgttatcgtatgctggaaggttacaacttatcaaatcagtcttgtttggtgttcaaacttattggagtcaggttttt |
7279531 |
T |
|
| Q |
156 |
gtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
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||||||||| |||| ||| ||||||||||||| |
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| T |
7279532 |
gtgcttcctcagaaggttctaaaacttattca |
7279563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 7279377 - 7279424
Alignment:
| Q |
38 |
gaagaagatcattcgtagaattgaaaattggtcttctaagttgttatc |
85 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
7279377 |
gaagaagatcatttgtagaattgaaaattggtcttccaagttgttatc |
7279424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 27180452 - 27180315
Alignment:
| Q |
35 |
agtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaa |
134 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||| | |||||||||||| |||||| |||| || |||||||| || | || ||||||||||| ||| |
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| T |
27180452 |
agtgaagagaataattagtaggattgaaaattggtcctttaagttgttatcctatgctggtagattgcaacttattaagttagtgttgtttggtgtgcaa |
27180353 |
T |
|
| Q |
135 |
ccttattggagtcaggtttttgtgcttcctaagaaagt |
172 |
Q |
| |
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| |||||||| || || |||| |||||| ||||||| |
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| T |
27180352 |
acatattggagccaagtatttgctcttcctgagaaagt |
27180315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 13940708 - 13940818
Alignment:
| Q |
35 |
agtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaa |
134 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||| |||||||||||||| |||| | |||| || |||||||| || || ||||||||||| ||| |
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| T |
13940708 |
agtgaagagaataattagtaggattgaaaattggtcctctaagttgttatcctatgttggtagattgcaacttattaagtcagtgttgtttggtgtgcaa |
13940807 |
T |
|
| Q |
135 |
ccttattggag |
145 |
Q |
| |
|
|||||||||| |
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|
| T |
13940808 |
acttattggag |
13940818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 18262141 - 18261990
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
18262141 |
gtgaagaggatcatttgtagaatcgaaaattggtctcctaagttgttatcgtatgctggtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
18262042 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
18262041 |
cttattggagtcaggtttttgtgcttcctcagaaggttctaaaacttattca |
18261990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 33632219 - 33632068
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||| |||| ||||||||||||||| |||||||||||||||||| |
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| T |
33632219 |
gtgaagaggatcatttatagaatcgaaaattggtcttctaagttcttatcgtatgctggtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
33632120 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
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|
| T |
33632119 |
cttattggagtcaggtttttgtgcttcctcagaaggttctaaaacttattca |
33632068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 7478863 - 7478733
Alignment:
| Q |
57 |
attgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaaccttattggagtcaggtttttg |
156 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| | || ||||||||||| || || || |||||||| ||| |||||||||| || || ||| |
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| T |
7478863 |
attgaaaactggtcatcaaagttgttatcttatgccggaagattacaacttattaagtcagtgttatttggtgtgcaaacttattggagccaagtcttta |
7478764 |
T |
|
| Q |
157 |
tgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
|||||||| |||||| | ||||||||||| |
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|
| T |
7478763 |
cccttcctaaaaaagttttgaaacttattca |
7478733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 3939003 - 3938852
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||| ||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
3939003 |
gtgaagaggatcatttgtagaatcgaaaattggcattctaagttgttatcgtatgctggtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
3938904 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
3938903 |
cttattggagtcaggtttttgtgcttcctcagaaggtgctaaaacttattca |
3938852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 5669565 - 5669627
Alignment:
| Q |
35 |
agtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtag |
97 |
Q |
| |
|
|||||||| ||| ||| |||| |||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
5669565 |
agtgaagaggataattagtaggattgaaaattggtcctctaagttgttatcatatgctggtag |
5669627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 16977 - 17127
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
| |
|
||||||| ||| ||| ||||||| |||||||||||||||| |||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
16977 |
gtgaagaggattatttgtagaatcgaaaattggtcttctaggttgttatgt-atgctggtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
17075 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| ||||||||||||| |
|
|
| T |
17076 |
cttattggagtcaggtttttgtgcttcctcataaggttctaaaacttattca |
17127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 30281237 - 30281086
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaac |
135 |
Q |
| |
|
||||||| ||| ||| ||||||| ||||||||| ||||||| ||||||| |||||| |||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
30281237 |
gtgaagaggataatttgtagaatcgaaaattggaattctaagatgttatcgtatgctggtaggttacaacttatcaaatcagtcttgtttggtgttcaaa |
30281138 |
T |
|
| Q |
136 |
cttattggagtcaggtttttgtgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
30281137 |
cttattggagtcaggtttttgtgcttcctcagaaggtgctaaaacttattca |
30281086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 23122692 - 23122822
Alignment:
| Q |
57 |
attgaaaattggtcttctaagttgttatcttatgctagtagcttacaacttatcaaaattgtcttgtttggtgttcaaccttattggagtcaggtttttg |
156 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| | || ||||||||||| || || || |||||||| ||| |||||||||| || || |||| |
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|
| T |
23122692 |
attgaaaactggtcatcaaagttgttatcttatgccggaagattacaacttattaagtcagtgttatttggtgtgcaaacttattggagccaagtctttg |
23122791 |
T |
|
| Q |
157 |
tgcttcctaagaaagttataaaacttattca |
187 |
Q |
| |
|
|||||||| |||||| | ||||||||||| |
|
|
| T |
23122792 |
cccttcctaaaaaagttttgaaacttattca |
23122822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 35167239 - 35167202
Alignment:
| Q |
36 |
gtgaagaagatcattcgtagaattgaaaattggtcttc |
73 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35167239 |
gtgaagaagatcatttgtagaattgaaaattggtcttc |
35167202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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