View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_high_13 (Length: 367)

Name: NF19848_high_13
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_high_13
NF19848_high_13
[»] chr5 (9 HSPs)
chr5 (116-354)||(26836401-26836638)
chr5 (120-354)||(4734872-4735101)
chr5 (1-116)||(34713447-34713559)
chr5 (123-212)||(22004578-22004667)
chr5 (133-205)||(19081372-19081444)
chr5 (116-163)||(30442667-30442714)
chr5 (116-158)||(32872166-32872208)
chr5 (123-160)||(36971153-36971190)
chr5 (122-182)||(29656067-29656127)
[»] chr4 (4 HSPs)
chr4 (116-354)||(21207386-21207624)
chr4 (116-272)||(50972985-50973142)
chr4 (116-172)||(17404768-17404824)
chr4 (116-174)||(41813488-41813546)
[»] chr2 (5 HSPs)
chr2 (116-354)||(1613188-1613409)
chr2 (152-336)||(24460874-24461057)
chr2 (116-181)||(2040163-2040228)
chr2 (116-160)||(12742948-12742992)
chr2 (116-160)||(23347751-23347795)
[»] chr8 (9 HSPs)
chr8 (120-300)||(24779357-24779534)
chr8 (289-354)||(24785495-24785560)
chr8 (116-212)||(1849846-1849942)
chr8 (123-160)||(8164104-8164141)
chr8 (122-160)||(15610347-15610385)
chr8 (285-351)||(19172258-19172324)
chr8 (117-158)||(14672345-14672386)
chr8 (116-160)||(27535271-27535315)
chr8 (122-197)||(33199048-33199124)
[»] chr7 (9 HSPs)
chr7 (116-212)||(13764897-13764993)
chr7 (116-181)||(11646705-11646770)
chr7 (116-160)||(26906538-26906582)
chr7 (123-193)||(6841394-6841464)
chr7 (115-160)||(44548540-44548585)
chr7 (122-193)||(7448982-7449053)
chr7 (116-158)||(1264910-1264952)
chr7 (116-158)||(48846986-48847028)
chr7 (116-156)||(39445848-39445888)
[»] scaffold0318 (1 HSPs)
scaffold0318 (116-211)||(6493-6588)
[»] scaffold0003 (2 HSPs)
scaffold0003 (122-212)||(40094-40184)
scaffold0003 (116-180)||(33478-33542)
[»] chr6 (9 HSPs)
chr6 (122-212)||(27447174-27447264)
chr6 (116-205)||(30906236-30906325)
chr6 (116-178)||(8976996-8977058)
chr6 (132-210)||(10095417-10095495)
chr6 (123-160)||(2918380-2918417)
chr6 (116-199)||(19121424-19121507)
chr6 (116-160)||(3066449-3066493)
chr6 (116-172)||(4659056-4659112)
chr6 (116-160)||(33051359-33051403)
[»] chr3 (19 HSPs)
chr3 (116-163)||(24758761-24758808)
chr3 (116-163)||(24767758-24767805)
chr3 (114-193)||(13867397-13867476)
chr3 (120-163)||(24813333-24813376)
chr3 (120-163)||(24827206-24827249)
chr3 (116-163)||(33648120-33648167)
chr3 (123-190)||(52134614-52134681)
chr3 (116-163)||(53024667-53024714)
chr3 (116-164)||(33648063-33648111)
chr3 (116-191)||(3848152-3848227)
chr3 (116-159)||(32013721-32013764)
chr3 (123-160)||(50836138-50836175)
chr3 (123-160)||(50839678-50839715)
chr3 (116-160)||(11396759-11396803)
chr3 (116-160)||(17689641-17689685)
chr3 (116-160)||(19769864-19769908)
chr3 (122-213)||(47761256-47761347)
chr3 (116-158)||(31687845-31687887)
chr3 (116-184)||(2733171-2733238)
[»] chr1 (5 HSPs)
chr1 (116-174)||(31768413-31768471)
chr1 (122-183)||(23597864-23597925)
chr1 (116-174)||(7604859-7604917)
chr1 (116-182)||(42773296-42773362)
chr1 (126-163)||(25226952-25226989)
[»] scaffold0096 (2 HSPs)
scaffold0096 (116-160)||(32686-32730)
scaffold0096 (143-193)||(32453-32503)
[»] scaffold0596 (1 HSPs)
scaffold0596 (116-160)||(1646-1690)
[»] scaffold0475 (1 HSPs)
scaffold0475 (116-172)||(6353-6409)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 116 - 354
Target Start/End: Original strand, 26836401 - 26836638
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26836401 actaggacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 26836500  T
Q  216 tttatgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatatattactctcaggaattgatatagataaaattatcattaagaat 315  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||| |  |||||||    
T  26836501 tttatgtccttagatcacacacccgtgcgtcgtacgggcaagatatatgtaaaatatattacggtcatgaattgatatagataaaatta-ccgtaagaat 26836599  T
Q  316 ctaattcaaaaacaatgtatagtaaataacacataaaaa 354  Q
    | |||||||||||||||||||||||||||||||||||||    
T  26836600 ccaattcaaaaacaatgtatagtaaataacacataaaaa 26836638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 120 - 354
Target Start/End: Original strand, 4734872 - 4735101
Alignment:
Q  120 gtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatatttta 219  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4734872 gtacttttacccgtgctaccgcccgagacattaacaatggagaagctgatatattgcaacatgatctattacatcgaaaacaaaacgattcaatatttta 4734971  T
Q  220 tgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatatattactctcaggaattgatatagataaaattatcattaagaatctaa 319  Q
    |||||||||||  ||||||||||| |||||||| | ||||||||| ||||||||||||| ||| |||||||   ||||||||||||| ||||||||| ||    
T  4734972 tgtccttagat--cacacccgtgcgtcgtacggacgagatatatgtaaaatatattactgtcatgaattga---agataaaattatcgttaagaatccaa 4735066  T
Q  320 ttcaaaaacaatgtatagtaaataacacataaaaa 354  Q
    ||||||||||||||||| |||||||||||||||||    
T  4735067 ttcaaaaacaatgtataataaataacacataaaaa 4735101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34713447 - 34713559
Alignment:
Q  1 acacactagatggtgtacatttatttataatatattttttgtgtgttatacataaccctaaactacaataatctcatgagtataccggttcaatggttag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||||| ||    
T  34713447 acacactagatggtgtacatttatttataatatattttttgtgtgttatatataaccctaaact---ataatctcatgagtataccggttcaatggtcag 34713543  T
Q  101 cttgatttcgattaca 116  Q
    ||||||||||||||||    
T  34713544 cttgatttcgattaca 34713559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 22004578 - 22004667
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 212  Q
    |||||||| |||||||||||||||||||||| |||||| || || ||||||| |||||||||  ||||||| || || ||||| ||||||    
T  22004578 cttttacctgtgctaccgcccgggacattaaaaatggagaagctaatatattacaatatgattcattacatagataagaaaacaattcaa 22004667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 19081372 - 19081444
Alignment:
Q  133 tgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaac 205  Q
    |||||||| ||||| ||| ||||||||| || || |||||||||||||||||| ||||||| ||||| |||||    
T  19081372 tgctaccgtccgggtcataaacaatggagaagctaatatattgcaatatgatccattacatagaaaagaaaac 19081444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 30442667 - 30442714
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    ||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  30442667 actaggactattacccgtgctaacgcccgggacattaaaaatggaaaa 30442714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 32872208 - 32872166
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatg 158  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  32872208 actaggacttttacccgtgctaacgcccgggacattaaaaatg 32872166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 36971190 - 36971153
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  36971190 cttttacccgtgctaccgcccgggatattaaaaatgga 36971153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 29656067 - 29656127
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatg 182  Q
    ||||||||||||||||||||||||| ||| ||||| ||| ||  | |||| ||||||||||    
T  29656067 acttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 29656127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 116 - 354
Target Start/End: Original strand, 21207386 - 21207624
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  21207386 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaagctgatatattgcaatatgatttattacatcgaatacaaaacgattcaatat 21207485  T
Q  216 tttatgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatatattactctcaggaattgatatagataaaattatcattaagaat 315  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||| | ||||||||    
T  21207486 tttatgtccttagatcacacacctgtgcgtcgtacgggcgagatatatgtaaaatatattactgtcatgaattgatatagataaaattaccgttaagaat 21207585  T
Q  316 ctaattcaaaaacaatgtatagtaaataacacataaaaa 354  Q
    | |||||||||| |||||||| |||||||||||||||||    
T  21207586 ccaattcaaaaataatgtataataaataacacataaaaa 21207624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 116 - 272
Target Start/End: Original strand, 50972985 - 50973142
Alignment:
Q  116 actagtacttttaccc-gtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaata 214  Q
    ||||||| |||||||| |||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  50972985 actagtaattttaccccgtgctaccgccctggacattaacattggagaagctgatatattgcaatatgatctattacatcgaagacaaaatgattcaata 50973084  T
Q  215 ttttatgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatat 272  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  50973085 ttttatgtccttagatcacacacccgtgcatcgtacgggtgagatatatgtaaaatat 50973142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 17404768 - 17404824
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 172  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||| ||||| |||||    
T  17404768 actagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatata 17404824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 41813546 - 41813488
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 174  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| || || |||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 41813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 116 - 354
Target Start/End: Original strand, 1613188 - 1613409
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 215  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| || ||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1613188 actagtacttttatccgtactaccgcccggaacattaacaattgagaagttgatatattgcaatatgatctattacatcgaaaataaaacgattcaatat 1613287  T
Q  216 tttatgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatatattactctcaggaattgatatagataaaattatcattaagaat 315  Q
    |||||||                 |||| |||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  1613288 tttatgt-----------------gtgcgtcgtacgggcgagatatatgtaaaatatattactgtcatgaattgatatagataaaattaccattaagaat 1613370  T
Q  316 ctaattcaaaaacaatgtatagtaaataacacataaaaa 354  Q
      |||||||||||||||||||||||||||||||||||||    
T  1613371 tcaattcaaaaacaatgtatagtaaataacacataaaaa 1613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 152 - 336
Target Start/End: Complemental strand, 24461057 - 24460874
Alignment:
Q  152 aacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatattttatgtccttagatcacacacccgtgcatcgtacg 251  Q
    ||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  24461057 aacaaaggagaagctggtatattgcaatatgatctattacatcgaaaacaaaacgattcaatattttatgtctttagatcacacacccgtgcgtcgtacg 24460958  T
Q  252 ggcaagatatatgaaaaatatattactctcaggaattgatatagataaaattatcattaagaatctaattcaaaaacaatgtata 336  Q
    ||| ||||| |||  |||||||||||| ||| |||||||| |||||||||||| |||||| |||| |||||||||||||||||||    
T  24460957 ggcgagatagatgtcaaatatattactgtcatgaattgat-tagataaaattaccattaaaaatccaattcaaaaacaatgtata 24460874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 2040163 - 2040228
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatat 181  Q
    ||||| ||||||||||||||||||||||||| ||| || |||||| ||| | ||||||||||||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaaattaatatattgcaatat 2040228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 12742992 - 12742948
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  12742992 actaggactattacccgtgctaacgcccgggacattaaaaatgga 12742948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 23347751 - 23347795
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  23347751 actaggactattacccgtgctaacgcccgggacattaaaaatgga 23347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 24779357 - 24779534
Alignment:
Q  120 gtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatatttta 219  Q
    ||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |    ||||||||||||||    
T  24779357 gtacttttacccgtgctaccgcctgggacaccaacaatggagaaactgatatattgcaatatgatctattacatcgaaaatag---gattcaatatttta 24779453  T
Q  220 tgtccttagatcacacacccgtgcatcgtacgggcaagatatatgaaaaatatattactctcaggaattgatatagataaa 300  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||| | ||| |||||||||||||||||    
T  24779454 tgtccttagatcacacacccgtgcgtcgtatgggcaagatatatgtcaaatatattaatgtcatgaattgatatagataaa 24779534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 24785495 - 24785560
Alignment:
Q  289 gatatagataaaattatcattaagaatctaattcaaaaacaatgtatagtaaataacacataaaaa 354  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  24785495 gatatagataaaattacctttaagaatctaattcaaaaacaatgtatagtaaataacacataaaaa 24785560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 1849846 - 1849942
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 212  Q
    ||||| || ||||||||||||||| |||||| ||| ||||||||| ||||| |||||||||||||||||| ||||||| || || ||||| ||||||    
T  1849846 actagaacatttacccgtgctaccacccgggtcataaacaatggataaactaatatattgcaatatgatccattacatagataagaaaacaattcaa 1849942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 8164141 - 8164104
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  8164141 cttttacccgtgctaccgcccgggacattaaaaatgga 8164104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 15610347 - 15610385
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  15610347 acttttacccgtgctaccgcccgggtcataaacaatgga 15610385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 19172324 - 19172258
Alignment:
Q  285 aattgatatagataaaattatcattaagaatctaattcaaaaacaatgtatagtaaataacacataa 351  Q
    |||||||||  |||||||||  || || | || |||||||||| |||||||||||||||||||||||    
T  19172324 aattgatatgtataaaattacaataaaaagtccaattcaaaaataatgtatagtaaataacacataa 19172258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 14672345 - 14672386
Alignment:
Q  117 ctagtacttttacccgtgctaccgcccgggacattaacaatg 158  Q
    |||| |||||||||||||||| ||||||||||||||| ||||    
T  14672345 ctaggacttttacccgtgctaacgcccgggacattaaaaatg 14672386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 27535271 - 27535315
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||||    
T  27535271 actaggacttttacccgtgctaacgctcgggacattaaaaatgga 27535315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 33199124 - 33199048
Alignment:
Q  122 acttttacccgtgctaccgcccggga-cattaacaatggaaaaactgatatattgcaatatgatctattacatcgaa 197  Q
    |||||||||||||||| | ||||||  ||| ||||||||| ||  | ||||||||||||| |||| |||||||||||    
T  33199124 acttttacccgtgctatcacccggggtcataaacaatggagaagataatatattgcaataagatccattacatcgaa 33199048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 13764993 - 13764897
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 212  Q
    ||||| ||||||||||||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||| || || || ||||| ||||||    
T  13764993 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaatatgatctattatatagataagaaaacaattcaa 13764897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 11646705 - 11646770
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatat 181  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  11646705 actagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatatattgcaatat 11646770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 26906538 - 26906582
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  26906538 actaggacttttacccgtgctaccgcccgggacattaaaaatgga 26906582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 6841464 - 6841394
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 193  Q
    |||||||||||||||| ||||||| ||| ||||||||| || || ||||||| || ||||||| |||||||    
T  6841464 cttttacccgtgctactgcccgggtcataaacaatggagaagctaatatattacactatgatcaattacat 6841394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 44548585 - 44548540
Alignment:
Q  115 cactagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||    
T  44548585 cactagtacttttacccgtgctaccgcccgggtcataaactatgga 44548540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 7448982 - 7449053
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 193  Q
    ||||||| ||||||||||||||| | ||| ||||||||| ||  | ||||||||||||| |||| |||||||    
T  7448982 acttttatccgtgctaccgcccgagtcataaacaatggagaagttaatatattgcaataagatccattacat 7449053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 1264952 - 1264910
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatg 158  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  1264952 actaggacttttacccgtgctaacgcccgggacattaaaaatg 1264910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 48846986 - 48847028
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatg 158  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  48846986 actaggacttttacccgtgctaacgcccgggacattaaaaatg 48847028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 39445888 - 39445848
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaa 156  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaa 39445848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 6588 - 6493
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattca 211  Q
    ||||| |||||||||||||||| |||||||| ||| | ||||||| ||||| |||||||||||||||||| ||||||| || || ||||| |||||    
T  6588 actagaacttttacccgtgctatcgcccgggtcataaccaatggagaaactaatatattgcaatatgatccattacatagataagaaaacaattca 6493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 40094 - 40184
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 212  Q
    ||||||||||||||||||||||||| ||| |||||||||||| || | ||||| ||||||||||||||| || || || ||||| ||||||    
T  40094 acttttacccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatgatctattatatagataagaaaacaattcaa 40184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 33478 - 33542
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaata 180  Q
    ||||| ||||||||||||||||||||||| | ||| |||||||||||| || |||||||||||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaata 33542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 27447264 - 27447174
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 212  Q
    ||||||||||||||||||||||||| ||| |||||||||||| || | ||||| ||||||||||||||| || || || ||||| ||||||    
T  27447264 acttttacccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatgatctattatatagataagaaaacaattcaa 27447174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 30906236 - 30906325
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaac 205  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| ||| | |||||||  ||||||||| ||||||| |||||||||||    
T  30906236 actagaacttttacccgtgctaccgcccgggtcataaacaacggagaaattaatatattataatatgatccattacatagaaaacaaaac 30906325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 8977058 - 8976996
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaa 178  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||    
T  8977058 actagaacttttacccgtgctaccgcccgggtcataaacaatggaaaagctaatatattgcaa 8976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 10095495 - 10095417
Alignment:
Q  132 gtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattc 210  Q
    ||||||||| ||||| ||| ||||||||| || || |||||||||||||||||| ||| ||| ||||| ||||| ||||    
T  10095495 gtgctaccgtccgggtcataaacaatggagaagctaatatattgcaatatgatccattgcatagaaaataaaacaattc 10095417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 2918380 - 2918417
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  2918380 cttttacccgtgctaccgcccgggacattaaaaatgga 2918417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 19121507 - 19121424
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaa 199  Q
    ||||| ||||||||||||||||||| ||||| |||  |||||||| ||  | ||||||||||||| |||  ||||||| |||||    
T  19121507 actagaacttttacccgtgctaccgtccgggtcatagacaatggagaagttaatatattgcaataagattcattacatagaaaa 19121424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 3066493 - 3066449
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||    
T  3066493 actagaacttttacccgtgctaccgcctgggtcataaacaatgga 3066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 4659056 - 4659112
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 172  Q
    ||||| ||||||||||||||||||| ||||  ||| ||||||||| ||||| |||||    
T  4659056 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 4659112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 33051359 - 33051403
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatgga 33051403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 24758761 - 24758808
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  24758761 actagtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24758808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 24767758 - 24767805
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  24767758 actagtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24767805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 13867397 - 13867476
Alignment:
Q  114 acactagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 193  Q
    ||||||| |||||||| ||||||||||| |||| ||| ||||||||| || || ||||||||||||| |||| |||||||    
T  13867397 acactagaacttttactcgtgctaccgctcgggtcataaacaatggagaagctaatatattgcaataagatccattacat 13867476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 24813376 - 24813333
Alignment:
Q  120 gtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24813376 gtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24813333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 24827249 - 24827206
Alignment:
Q  120 gtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24827249 gtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 33648120 - 33648167
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  33648120 actagtacttttacccgtgctaccgcctgggacattaaaaatggaaaa 33648167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 52134681 - 52134614
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctatta 190  Q
    ||||||||| |||||||||||||| ||| ||||||||| || || |||||||||||||||||| ||||    
T  52134681 cttttacccatgctaccgcccgggtcataaacaatggagaagctaatatattgcaatatgatcaatta 52134614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 53024667 - 53024714
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  53024667 actagtacttttacccgtgctaccgtccgggacattaaaaatggaaaa 53024714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 33648063 - 33648111
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaa 164  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  33648063 actagtacttttactcgtgctaccgtccgggacattaaaaatggaaaaa 33648111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 3848227 - 3848152
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattac 191  Q
    ||||| ||||||||||||||||||| ||||| ||| ||||| ||| ||||| ||||| ||||||| |||| |||||    
T  3848227 actagaacttttacccgtgctaccgtccgggtcataaacaaaggagaaactaatatagtgcaataagatccattac 3848152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 32013721 - 32013764
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgg 159  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  32013721 actagtactattacccgtgctaccgcccgggacattaaaaatgg 32013764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 50836175 - 50836138
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  50836175 cttttacccgtgctaccgcccgggacattaaaaatgga 50836138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 50839678 - 50839715
Alignment:
Q  123 cttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  50839678 cttttacccgtgctaccgcccgggacattaaaaatgga 50839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 11396803 - 11396759
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatgga 11396759  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 17689685 - 17689641
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  17689685 actaggacttttacccgtgctaacgcccgggacattaaaaatgga 17689641  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 19769908 - 19769864
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  19769908 actagaacttttacccgtgctaacgcccgggacattaaaaatgga 19769864  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 47761256 - 47761347
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaat 213  Q
    ||||||| |||||||||||  |||| ||| || |||||| ||  | ||||||||||||| |||| ||||||| ||||| ||||| |||||||    
T  47761256 acttttatccgtgctaccgttcgggtcataaataatggagaagttaatatattgcaataagatccattacatagaaaataaaacaattcaat 47761347  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 31687887 - 31687845
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatg 158  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  31687887 actaggacttttacccgtgctaacgcccgggacattaaaaatg 31687845  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 2733171 - 2733238
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgat 184  Q
    ||||| ||||||||||||||||| ||||||| ||| ||| |||| | |||| ||||||||||| |||||    
T  2733171 actagaacttttacccgtgctactgcccgggtcataaactatgg-agaactaatatattgcaaaatgat 2733238  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 31768413 - 31768471
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 174  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| ||||| |||||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaaactaatatatt 31768471  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 23597864 - 23597925
Alignment:
Q  122 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatga 183  Q
    |||||||||||||| |||| ||||  ||| ||||||||| ||||| ||||||||||||||||    
T  23597864 acttttacccgtgccaccgtccggctcataaacaatggagaaactaatatattgcaatatga 23597925  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 7604859 - 7604917
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 174  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| || || |||||||    
T  7604859 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 7604917  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 42773362 - 42773296
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatg 182  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| ||  | |||| ||||||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 42773296  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 25226989 - 25226952
Alignment:
Q  126 ttacccgtgctaccgcccgggacattaacaatggaaaa 163  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  25226989 ttacccgtgctaacgcccgggacattaaaaatggaaaa 25226952  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 32730 - 32686
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  32730 actaggacttttacccgtgctaacgcccgggacattaaaaatgga 32686  T

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Target: scaffold0096; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 32503 - 32453
Alignment:
Q  143 cgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 193  Q
    |||| ||| ||||||||| || || ||||||||||||||||||||||||||    
T  32503 cgggtcataaacaatggagaagctaatatattgcaatatgatctattacat 32453  T

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Target: scaffold0596 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 1690 - 1646
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatgga 160  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  1690 actaggactattacccgtgctaacgcccgggacattaaaaatgga 1646  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 6353 - 6409
Alignment:
Q  116 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 172  Q
    ||||| ||||||||||||||||||| ||||  ||| ||||||||| ||||| |||||    
T  6353 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 6409  T

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