View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_high_15 (Length: 332)
Name: NF19848_high_15
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 34044871 - 34044566
Alignment:
| Q |
18 |
ataagttaatactaatgactcttaccaaggattttattttcctcaaacgattacgctgaagaatgagatatacaccgacctata-gttccttaaccactc |
116 |
Q |
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|||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||||||| | || |
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| T |
34044871 |
ataagttaatactaatagctcttaccaatgatttcattttcttcaaacgattacgctgaagaataagatctacaccgacatataagttccttaactattc |
34044772 |
T |
|
| Q |
117 |
caaagagtgttaagtacgatgttttgggtgtttgagctactttgctaagaaatgcataaaatggtgtgacatactagtccaatatttatgggagaactca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34044771 |
caaagagtgttaagtacgatgttttgggtgtttgagctactttgctaagaaatgcataaaatggtgtgacatactaatccaatatttatgggagaactct |
34044672 |
T |
|
| Q |
217 |
agtccaattggtcaaataactcggactacataaactagtcttgcttggctatttatgtgggtaatgcgtgaatcctgccattgttggggatatgtgttgc |
316 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |
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| T |
34044671 |
agtccaattggtcaaataacccggactacataaactagtgctgcttggctatttatgtgggtaatgcgtgaatcctaccgttgttggggatatgtggtgc |
34044572 |
T |
|
| Q |
317 |
cctatg |
322 |
Q |
| |
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|||||| |
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|
| T |
34044571 |
cctatg |
34044566 |
T |
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