View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19848_high_18 (Length: 301)

Name: NF19848_high_18
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19848_high_18
NF19848_high_18
[»] chr8 (1 HSPs)
chr8 (1-301)||(29606918-29607230)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 29606918 - 29607230
Alignment:
Q  1 accagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29606918 accagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagac 29607017  T
Q  101 acacc------------agcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaagagaagaaaacacaagcatagtaagcata 188  Q
    |||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607018 acaccatcatcagcaccagcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaagagaagaaaacacaagcatagtaagcata 29607117  T
Q  189 agaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtcccccagcaccactggctgatgataatactac 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29607118 agaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtcccccagcaccactggctgatgataatactac 29607217  T
Q  289 aatgagttcagat 301  Q
    |||||||||||||    
T  29607218 aatgagttcagat 29607230  T

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