View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19848_high_27 (Length: 250)
Name: NF19848_high_27
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34430185 - 34430424
Alignment:
| Q |
1 |
ttggcttggatcttcttttgtagatatatgtagcaatcttgctgattgattgcatgcatgtgaatgttgactatttataagccattttcacatatcacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34430185 |
ttggcttggatcttcttttgtagatatatgtagcaatcttgctgattgattgcatgcatgtgaatgttgattatttataagccattttcacatatcacat |
34430284 |
T |
|
| Q |
101 |
ttgaattgcaagttaatttactgtatcgatgatgttagaactctcacgtgaaagatactgattgcaattataattcatacaggtgctttttgtttcacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34430285 |
ttgaattgcaagttaatttactgtatcgatgatgttagaactctcacgtgaaagatactgattgcaattataattcatacaggtgctttttgtttcacca |
34430384 |
T |
|
| Q |
201 |
gagcgattcttgaatgaagaatttctgtctgttatctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34430385 |
gagcgattcttgaatgaagaatttctgtctgttatctctg |
34430424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University