View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_high_3 (Length: 493)
Name: NF19848_high_3
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 2021764 - 2021300
Alignment:
| Q |
12 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaagtcttatcttcaaacctttgaacaatcctctgaagttcaattaatccctcataactag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
2021764 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaattaatccctcataactag |
2021665 |
T |
|
| Q |
112 |
aaacaggacaacgttttcttaccgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacagacaatggcac |
211 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021664 |
aaacaggaagacgttttcttaacgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacagacaatggcac |
2021565 |
T |
|
| Q |
212 |
aaacactaaacaagattagcggtaaaaagataatcagtttttcagataataatttcttccctcacctgcagaacaaaaataaaatagagacaattaaact |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2021564 |
aaacactaaacaagattagcggtaaatagataatcagtttttcagataataatttcttccctcacctgcagaacaaaaaaaaaatagagacaattaaact |
2021465 |
T |
|
| Q |
312 |
actgtttagaggacagatccaaggataaccattcatcaatgttacnnnnnnntttgttccaatgatttcaaaatgttacacaatgcaacagcaattgatt |
411 |
Q |
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| T |
2021464 |
actgtttagaggacagatccaaggataaccattcatcaatgttacaaaaaaatttgttccaatgatttcaaaatgttacacaatgcaacagcaattgatt |
2021365 |
T |
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| Q |
412 |
gaaaacgtgaaaagtatatagtattaacaatttcatattcaaatttactcaactatggtcattcc |
476 |
Q |
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| T |
2021364 |
gaaaacttgaaaagtatatagtattaacaatttcatattcaaatttactcaactatggtcattcc |
2021300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 1990202 - 1989934
Alignment:
| Q |
12 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaagtcttatcttcaaacctttgaacaatcctctgaagttcaattaatccctcataactag |
111 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||||||| ||| | || ||||||||| |||||||||| ||| || |
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| T |
1990202 |
aatactcgtaatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttccgaagttcaagtaatccctcagaaccag |
1990103 |
T |
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| Q |
112 |
aaacaggacaacgttttcttaccgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacagacaatggcac |
211 |
Q |
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||| |||| | |||||||| ||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
1990102 |
aaataggatgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcagacaatggcac |
1990003 |
T |
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| Q |
212 |
aaacactaaacaagattagcggtaaaaagataatcagtttttcagataataatttcttccctcacctgcagaa |
284 |
Q |
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| T |
1990002 |
aaacac--aacaagattagcggtaaaaagataatc--tttgtcagataattatttattcccacacctgcagaa |
1989934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 2035952 - 2035773
Alignment:
| Q |
12 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaagtcttatcttcaaacctttgaacaatcctctgaagttcaattaatccctcataactag |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||| ||||| || ||||||||| ||||||||| ||| || |
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| T |
2035952 |
aatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccag |
2035853 |
T |
|
| Q |
112 |
aaacaggacaacgttttcttaccgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacaga |
192 |
Q |
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| T |
2035852 |
aaacgggaagatgttttcttaatgtgtccattctacaaaggaaaagcaattatttcaaa-ttagatagtgcaagtgacaga |
2035773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 2019132 - 2018942
Alignment:
| Q |
12 |
aatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaagtcttatcttcaaacctttgaacaatcctctgaagttcaattaatccctcataactag |
111 |
Q |
| |
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|||||| ||||||||||||||| ||||||||| ||||| ||| ||||||||||||||| |||| ||| | ||||||||| ||||||||| ||| || |
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| T |
2019132 |
aatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaaccag |
2019033 |
T |
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| Q |
112 |
aaacaggacaacgttttcttaccgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacaga |
202 |
Q |
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| T |
2019032 |
aaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgcaactgacagagatgttcaga |
2018942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 1989744 - 1989706
Alignment:
| Q |
364 |
tttgttccaatgatttcaaaatgttacacaatgcaacag |
402 |
Q |
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| T |
1989744 |
tttgttccaattatttcaaaatgttacacaatgcaacag |
1989706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 2018820 - 2018755
Alignment:
| Q |
364 |
tttgttccaatgatttcaaaatgttacacaatgcaacagcaattgattg-aaaacgtgaaaagtat |
428 |
Q |
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| T |
2018820 |
tttgttccaattatttcaaaatgttacagaatgcaagagcaaatgatcgaaaaacatgaaaagtat |
2018755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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