View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19848_high_33 (Length: 202)
Name: NF19848_high_33
Description: NF19848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19848_high_33 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0864 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 118877 - 118775
Alignment:
| Q |
67 |
ttttgaggtatatgtaaactagtctgcaatgaaacgcatttttatttcacactattacattc-tttgctttattatttgattgctaagatgcactttcat |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
118877 |
ttttgaggtatatgtaaactagtctgcaatgaaacgcatttttatttcacactattacattcttttgctttattatttgattgctaagatgcactttcat |
118778 |
T |
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| Q |
166 |
gca |
168 |
Q |
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||| |
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| T |
118777 |
gca |
118775 |
T |
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Target: scaffold0864 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 49 - 169
Alignment:
| Q |
49 |
aaactctttggtgacattttt-tgaggtatatgtaaactagtctgcaatgaaacgcat--ttttatttcacactattacattctttgctttattatttga |
145 |
Q |
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|||||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||| |
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| T |
49 |
aaactcattggtgacatttttatgaggtatatgtatactcgtctgcaatgaaactcatatttttatttcacactattacattatttgttttattatttga |
148 |
T |
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| Q |
146 |
ttgctaagatgcactttcatg |
166 |
Q |
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| T |
149 |
ttactaagatgcattttcatg |
169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 22608300 - 22608437
Alignment:
| Q |
26 |
cattgttctctatggctcctattaaactctttggtgacattttttgaggtatatgtaaactagtctgcaatgaaacgcat-ttttatttcacactattac |
124 |
Q |
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| T |
22608300 |
cattgttctcttcggctcctagtgaattcattggtgacattttttcaggtatatgtatactgatctgcaatgaaactcatattttattttacccttttac |
22608399 |
T |
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| Q |
125 |
attctttgctttattatttgattgctaagatgcactttc |
163 |
Q |
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| T |
22608400 |
attcctggcttaatt-ttttattgctaagatgaactttc |
22608437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 248867 - 248737
Alignment:
| Q |
38 |
tggctcctattaaactctttggtgacattttttgaggtatatgtaaactagtctgcaatgaaacgcat-ttttatttcacactattacattctttgcttt |
136 |
Q |
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||||||||| | || || ||||||||||||||| ||||||||||| || ||||||||||||| ||| |||||||| || || ||||||| | |||| |
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| T |
248867 |
tggctcctagtgaattcattggtgacattttttcaggtatatgtattctgatctgcaatgaaactcatattttattttacccttttacatttctggctta |
248768 |
T |
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| Q |
137 |
attatttgattgctaagatgcactttcatgca |
168 |
Q |
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||| ||| |||||||||||| |||||| |||| |
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| T |
248767 |
att-ttttattgctaagatgaactttcctgca |
248737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 1742826 - 1742706
Alignment:
| Q |
40 |
gctcctattaaactctttggtgacattttttgaggtatatgtaaactagtctgcaatgaaacgcatttttatttcacactattacattcttt-gcttta- |
137 |
Q |
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||||||| | ||||| |||||||||||||| |||||||| | || ||||||| |||||| ||||||||||| || || |||||||||| |||||| |
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| T |
1742826 |
gctcctactgaactcattggtgacatttttc-aggtatatatgtacctgtctgcagtgaaacacatttttattttacccttgtacattctttggctttat |
1742728 |
T |
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| Q |
138 |
-ttatttgattgctaagatgca |
158 |
Q |
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|| |||||||||||||||||| |
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| T |
1742727 |
tttttttgattgctaagatgca |
1742706 |
T |
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